Locus 8563

Sequence ID 3L_DroMel_CAF1
Location 22,343,916 – 22,344,035
Length 119
Max. P 0.781095
window14035

overview

Window 5

Location 22,343,916 – 22,344,035
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 84.78
Mean single sequence MFE -33.85
Consensus MFE -21.80
Energy contribution -24.55
Covariance contribution 2.75
Combinations/Pair 1.03
Mean z-score -2.14
Structure conservation index 0.64
SVM decision value 0.56
SVM RNA-class probability 0.781095
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22343916 119 - 23771897
-UUUUUUAUUUGGUGCUGCUGGUUUUAAGUGGCGAUCAAAUUUCUUGAUUGAAGCUCCACUUCCAAGACAAUGUGCAGCUGCUUGUCCUUAAACAGGAUACUCCAAAUGAUCCGUGGACC
-....((((((((.(((((..((((((((((((((((((.....))))))).....))))))..))))).....)))))....((((((.....))))))..)))))))).......... ( -34.10)
>DroPse_CAF1 41911 119 - 1
UUG-UUUAUUUGGAGCUGCUGCUUUUAAGUGGCGAUCAAAUUUCUUGAUUGAAGCUUCGAGUGCAAGACAAUGUGCAGCUGUUUGUCCUUAAACAGGAUACACAAAAACAGCGAAAGAGA
(((-(((((((((((((((..((....))..))((((((.....))))))..)))))))))))...)))))......((((((((((((.....))))))......))))))........ ( -35.80)
>DroEre_CAF1 12068 118 - 1
-UU-UUUAUUUGGUGCUGCCGGUUUUAAGUGGCGAUCAAAUUUCGUGAUUGAAGCUCCACUUCCAAGACAAUGUGCAGCUGCUUGUCCUUAAACAGGAUACUCCAAAUGACCUGAGGACA
-..-.((((((((.((((((.(((((((((((((((((.......)))))).....))))))..)))))...).)))))....((((((.....))))))..)))))))).......... ( -32.40)
>DroPer_CAF1 42321 116 - 1
GUG-GUAA--UGGAGC-GCUGCUUUUAAGUGGCGAUCAAAUUUCUUGAUUGAAGCUUCGAGUGCAAGACAAUGUGCAGCUGUUUGUCCUUAAACAGGAUACACAAAAACAGCGAAAGAGA
...-....--((((((-((..((....))..))((((((.....))))))...)))))).(..((......))..).((((((((((((.....))))))......))))))........ ( -33.10)
>consensus
_UG_UUUAUUUGGAGCUGCUGCUUUUAAGUGGCGAUCAAAUUUCUUGAUUGAAGCUCCAAGUCCAAGACAAUGUGCAGCUGCUUGUCCUUAAACAGGAUACACAAAAACAGCGAAAGACA
.....((((((((.((((((((....((((..(((((((.....)))))))..)))).....))).........)))))....((((((.....))))))..)))))))).......... (-21.80 = -24.55 +   2.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:08 2006