Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,341,116 – 22,341,207 |
Length | 91 |
Max. P | 0.580298 |
Location | 22,341,116 – 22,341,207 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.12 |
Mean single sequence MFE | -39.35 |
Consensus MFE | -17.90 |
Energy contribution | -20.40 |
Covariance contribution | 2.50 |
Combinations/Pair | 1.04 |
Mean z-score | -2.10 |
Structure conservation index | 0.45 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580298 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22341116 91 + 23771897 GGGCGUGCUGCUUUGAGAACUUAAUCUUGGCGGCU-U-GGGGGC--UUUUGGCCAGACAGCCGGACAG---------------GAGAAGAAGAAGAGGAGGAGGACUCCG---------- .((.((.((.((((.....(((..(((((.(((((-.-(..(((--.....)))...))))))..)))---------------))....)))....)))).)).)).)).---------- ( -32.20) >DroPse_CAF1 38561 120 + 1 GUGGAUGCUGCUUGGAGAACUUAAUCUUGGCGGCUUUUGCGGGCCCGGAUGGCCGGAUAGCCGGACAGCGGGGCGGAGUGGAAGAGAAGCAGAAAGGACAGAGGACUCCUGAAGCAGAGC .......((((((((((..(((..((((.((..((((..(..((((.(.((.((((....)))).)).).))))...)..))))....))....))))..)))..))))..))))))... ( -47.40) >DroEre_CAF1 8666 92 + 1 GGGCGUGCUGCUUUGAGAACUUAAUCUUGGCGGCUUU-GGGGGC--UUUUGGCCAGACAGCCGGACAG---------------GAAAAGAAGAAGAGGAGGAGGACUCCG---------- .((.((.((.((((.....(((..(((((.(((((..-...(((--.....)))....)))))..)))---------------))....)))....)))).)).)).)).---------- ( -30.40) >DroPer_CAF1 38952 120 + 1 GUGGAUGCUGCUUGGAGAACUUAAUCUUGGCGGCUUUUGCGGGCCCGGAUGGCCGGAUAGCCGGACAGCGGGGCGGAGUGGAAGAGAAGCAGAAAGGACAGAGGACUCCUGAAGCAGAGC .......((((((((((..(((..((((.((..((((..(..((((.(.((.((((....)))).)).).))))...)..))))....))....))))..)))..))))..))))))... ( -47.40) >consensus GGGCAUGCUGCUUGGAGAACUUAAUCUUGGCGGCUUU_GCGGGC__GGAUGGCCAGACAGCCGGACAG_______________GAGAAGAAGAAAAGAAAGAGGACUCCG__________ ......((((((..((........))..))))))......((((((.((((.((((....)))).)))).)))).....................((........))))........... (-17.90 = -20.40 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:07 2006