Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,340,048 – 22,340,140 |
Length | 92 |
Max. P | 0.750304 |
Location | 22,340,048 – 22,340,140 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.20 |
Mean single sequence MFE | -28.45 |
Consensus MFE | -19.16 |
Energy contribution | -18.60 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.18 |
Mean z-score | -1.72 |
Structure conservation index | 0.67 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750304 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22340048 92 - 23771897 AAGUUUGAACAAAUUACGCCCCUUAUCGGCGAAUGCGGCCAAACAUUUUGCCUAAAUUAAACAAAUUAAGGCGGCAGUCCCAA---UGGGAGUGG------------------------- ..(((((..(..(((.((((.......)))))))..)..)))))...((((((.((((.....)))).))))))((.((((..---.)))).)).------------------------- ( -26.50) >DroPse_CAF1 37552 119 - 1 AAGUUUGAGCAAAUUAUGGCGCUUAUCGCUGAAUGCGGCCAAACAUUUUGCAUAAAUUAAACAAAUUAAGGCAGC-GUCCCAGCCGAGGGAGUGGAAACUGGGAAACUGGGAAACUGAUA .((((((.(((((...((((......(((.....))))))).....))))).)))))).............(((.-.((((((((.((..........)).))...))))))..)))... ( -31.30) >DroEre_CAF1 7565 94 - 1 AAGUUUGAACAAAUUACGUCGCUUAUCGGCGAAUGCGGCCAAACAUUUUGCAUAAAUUAAACAAAUUAAGGCGGCAGUCCCGA---UGGGAGUGGGA----------------------- .............((((....((((((((.((.(((.(((......((((...........))))....))).))).))))))---)))).))))..----------------------- ( -24.70) >DroPer_CAF1 37937 119 - 1 AAGUUUGAGCAAAUUAUGGCGCUUAUCGCUGAAUGCGGCCAAACAUUUUGCAUAAAUUAAACAAAUUAAGGCAGC-GUCCCAGCCGAGGGAGUGGAAACUGGGAAACUGGGAAACUGAUA .((((((.(((((...((((......(((.....))))))).....))))).)))))).............(((.-.((((((((.((..........)).))...))))))..)))... ( -31.30) >consensus AAGUUUGAACAAAUUACGGCGCUUAUCGCCGAAUGCGGCCAAACAUUUUGCAUAAAUUAAACAAAUUAAGGCAGC_GUCCCAA___AGGGAGUGGAA_______________________ ..(((((..(..(((.(((((.....))))))))..)..)))))...((((...((((.....))))...))))((.((((......)))).)).......................... (-19.16 = -18.60 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:06 2006