Locus 8559

Sequence ID 3L_DroMel_CAF1
Location 22,335,408 – 22,335,500
Length 92
Max. P 0.552879
window14028

overview

Window 8

Location 22,335,408 – 22,335,500
Length 92
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 85.44
Mean single sequence MFE -22.07
Consensus MFE -18.72
Energy contribution -18.50
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -1.50
Structure conservation index 0.85
SVM decision value 0.04
SVM RNA-class probability 0.552879
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22335408 92 - 23771897
AUAAUGUGUGCCACUUGAAUGGAAAGCAACUCAUCUCAACUCUGAACGGAACUCAGAACA--------------------GUCGCUGAAAGAUUUCAUUUAUCAGCGAAAAG
....(((...(((......)))...)))............(((((.......)))))...--------------------.(((((((.((((...)))).))))))).... ( -19.20)
>DroSim_CAF1 2944 92 - 1
AUAAUGUGUGCCACUUGAAUGGAAAGCAACUCAUCUCAGCUCUGAACAGAACUCAGAACA--------------------GUCGCUGAAAGAUUUCAUUUAUCAGCGAAAAG
....(((...(((......)))...))).....(((.((.(((....))).)).)))...--------------------.(((((((.((((...)))).))))))).... ( -19.70)
>DroEre_CAF1 2943 112 - 1
AUAAUGUGUGCCACUUGAAUGGAAAGCAACUCAUCUCAACUCUGAACAGAACUCAGAACAGGCAAAAGUACAGCAGCCGAGUUGCUGAAAGAUUUCAUUUAUCAGCGAAAAG
........(((....(((((((((((((((((........(((((.......)))))...(((............)))))))))))......)))))))))...)))..... ( -27.30)
>consensus
AUAAUGUGUGCCACUUGAAUGGAAAGCAACUCAUCUCAACUCUGAACAGAACUCAGAACA____________________GUCGCUGAAAGAUUUCAUUUAUCAGCGAAAAG
....(((...(((......)))...)))............(((((.......)))))........................(((((((.((((...)))).))))))).... (-18.72 = -18.50 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:01 2006