Locus 8558

Sequence ID 3L_DroMel_CAF1
Location 22,335,051 – 22,335,148
Length 97
Max. P 0.642882
window14027

overview

Window 7

Location 22,335,051 – 22,335,148
Length 97
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 72.52
Mean single sequence MFE -24.60
Consensus MFE -5.68
Energy contribution -4.96
Covariance contribution -0.72
Combinations/Pair 1.27
Mean z-score -1.68
Structure conservation index 0.23
SVM decision value 0.23
SVM RNA-class probability 0.642882
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22335051 97 - 23771897
----------------GGGCAGAGCAAAGUCUUCGGGACAUUUCAUCAUUAG----GAGCGAAGGCGAUAA-AAUAGCAA-AACAACGUU-UGCCUUAUCACACGGAAUGAAGAGGGAAA
----------------.............(((((....((((((........----..((....))(((((-....((((-(......))-))).)))))....))))))..)))))... ( -19.20)
>DroPse_CAF1 31374 115 - 1
GCAAAGGCGAAGGCGAAGGCAACGAAAAGUCUUUG--CCUUUUCAUCAUUAGCCGAAAACCAAGGCGAUAAAAAUAGCAAAAACAACUCUGGGGCUUAUCAGA---AAUAGAGAGAGAGA
((((((((((((((...(....).....)))))))--))))).........(((.........)))..........))........(((((...((....)).---..)))))....... ( -30.50)
>DroSim_CAF1 2588 96 - 1
----------------GG-CCGAGCAAAGUCUUCGGAACAUUUCAUCAUUAG----GAGCGAAGGCGAUAA-AAUAGCAA-AACAACGUU-UGCCUUAUCACACGGAAUGAAGAGGGAAA
----------------..-(((((.......)))))..((((((........----..((....))(((((-....((((-(......))-))).)))))....)))))).......... ( -19.90)
>DroEre_CAF1 2580 98 - 1
----------------CGGCCCAGCAAAGUCUUCAGAACAUUUCAUCAUUAG----GACCGAAGGCGAUAA-AAUAGCAA-AACAACGUUUUGCCUUAUCACACGGACUGAAGAGGGAAA
----------------...(((.......(((((((.....(((.......)----))(((...(.(((((-....((((-(((...))))))).))))).).))).))))))))))... ( -22.91)
>DroPer_CAF1 31857 115 - 1
GCAAAGGCGAAGGCGAAGGCAACGAAAAGUCUUUG--CCUUUUCAUCAUUAGCCGAAAACCAAGGCGAUAAAAAUAGCAAAAACAACUCUGGGGCUUAUCAGA---AAUAGAGAGAGAGA
((((((((((((((...(....).....)))))))--))))).........(((.........)))..........))........(((((...((....)).---..)))))....... ( -30.50)
>consensus
________________AGGCAAAGCAAAGUCUUCGG_ACAUUUCAUCAUUAG____GAACGAAGGCGAUAA_AAUAGCAA_AACAACGUU_UGCCUUAUCACACGGAAUGAAGAGGGAAA
.............................((((((........................(....).(((((....(((.........))).....)))))........))))))...... ( -5.68 =  -4.96 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:00 2006