Locus 8557

Sequence ID 3L_DroMel_CAF1
Location 22,333,349 – 22,333,469
Length 120
Max. P 0.883789
window14026

overview

Window 6

Location 22,333,349 – 22,333,469
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 83.19
Mean single sequence MFE -30.05
Consensus MFE -19.58
Energy contribution -20.33
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.60
Structure conservation index 0.65
SVM decision value 0.93
SVM RNA-class probability 0.883789
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22333349 120 + 23771897
UACCCAGCCUUGGCACACAUCAAAUGAGUUGUGUGCCCUGCAAUAAGGCAAUAAGGCAGAAUGGCAGCCGCUCGGCACAAUGAGGAUUUUCACUUUUCUAGCUCACAUUUACACAAUUAA
......(((((((((((((.(......).)))))))).(((......)))..))))).(((((...(((....)))....((((.................))))))))).......... ( -31.93)
>DroSim_CAF1 860 111 + 1
UACCCAGCCUUGGCACACAUCAAAUGAAUUGUGUGCCGUGCAAUAA--------GGCAGAAAGGCAGCC-CUCAGCACAAUGAGGAUUUUCACUUUUCUAGCUCACAUUUACACAAUUAA
......((..(((((((((((....))..))))))))).)).....--------((((((((((....(-((((......))))).......))))))).)))................. ( -31.00)
>DroEre_CAF1 837 97 + 1
UA--CAGCCUUGGCACACAUCAAAUGAGUUGUGUGCCGUACAAUAA--------GGCAGAAAGGCAG-------------AGAGGCUUUUCACUUUUCUAGCUCACAUUUACACAAUUAA
..--..(((((((((((((.(......).)))))))).......))--------))).(((((((..-------------....)))))))............................. ( -27.21)
>consensus
UACCCAGCCUUGGCACACAUCAAAUGAGUUGUGUGCCGUGCAAUAA________GGCAGAAAGGCAGCC_CUC_GCACAAUGAGGAUUUUCACUUUUCUAGCUCACAUUUACACAAUUAA
...........((((((((((....))..)))))))).................((((((((((..((......)).....(((....))).))))))).)))................. (-19.58 = -20.33 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:59 2006