Locus 8554

Sequence ID 3L_DroMel_CAF1
Location 22,331,839 – 22,331,950
Length 111
Max. P 0.524289
window14022

overview

Window 2

Location 22,331,839 – 22,331,950
Length 111
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 87.95
Mean single sequence MFE -26.02
Consensus MFE -17.45
Energy contribution -18.70
Covariance contribution 1.25
Combinations/Pair 1.10
Mean z-score -1.64
Structure conservation index 0.67
SVM decision value -0.02
SVM RNA-class probability 0.524289
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22331839 111 - 23771897
ACAAAAGACCGAAAACAGAAGGAAACGCAGCCAGCAAAACAAUUGCAUUUCUUGGCCGAACAAAGCGUGUUUGGAUGGGGAUGGGGUGGCAAAAAGGGAGUAGGGGAAUAU
........((..........(....)((.(((.((((.....))))((..((...(((((((.....)))))))..))..))..))).)).....)).............. ( -26.20)
>DroSec_CAF1 11189 110 - 1
ACAAAAGUCCGAAAACAGAAGGAAACGCAGCCAGCAAAACAAUUGCAUUUCUUGGCCGAACAAAGCGUGUUUGAAUGGUGAUGGGG-GGCAAGAAGGGAGCAGGGGAAUAU
.......(((..........(....)((..((.((((.....))))..((((((.((...((.(.(((......))).)..))..)-).))))))))..))...))).... ( -25.50)
>DroEre_CAF1 9114 109 - 1
ACAAAAGACCGAAAACAGAAGGAAACGCAGCCAGCAAAACAAUUGCAUUUCUUGGCCGAACAAAGCGUGGUCGGAAG--UAUGAGGUUGUAGAACGGCAGCAGGGGAAUAU
......(.(((.........(....)((((((.((((.....))))((((((.(((((.........))))))))))--)....))))))....))))............. ( -25.80)
>DroYak_CAF1 8510 108 - 1
ACAAAAGACCGAAAACAGAAGGAAACGCAGCCAGCAA-ACAAUUGCAUUUCUUGGGCGAACAAAGCUUAUUCGGAAG--GAUGAGGUUGUAGAAUAGGAGCAGGGGAAUUU
........((..........(....)((.....((((-....))))...(((((..(..((((..(((((((....)--)))))).)))).)..))))))).))....... ( -26.60)
>consensus
ACAAAAGACCGAAAACAGAAGGAAACGCAGCCAGCAAAACAAUUGCAUUUCUUGGCCGAACAAAGCGUGUUCGGAAG__GAUGAGGUGGCAAAAAGGGAGCAGGGGAAUAU
........((..........(....)((((((.((((.....)))).........(((((((.....)))))))..........))))))............))....... (-17.45 = -18.70 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:56 2006