| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,331,727 – 22,331,819 |
| Length | 92 |
| Max. P | 0.849015 |
| Location | 22,331,727 – 22,331,819 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.48 |
| Mean single sequence MFE | -25.23 |
| Consensus MFE | -12.26 |
| Energy contribution | -14.74 |
| Covariance contribution | 2.48 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.849015 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22331727 92 + 23771897 GUCACAACUCCUGAUUAGAUCUGGAAUGGGGUUUAUCUUAUGAUGAUCUAUGCUAUGGUCAUUAAAAGUUGUC---------------------CCAAG-GACGUUGUGC---UCC--G- (.(((((((((((((...))).....(((((.....(((.((((((((........)))))))).)))...))---------------------)))))-)).)))))))---...--.- ( -26.80) >DroVir_CAF1 10280 117 + 1 CUUAUUGCUCUUUCUUAUUUCUUAUUUCUUAUUUACUCUUUGCUGAUUUAUG--AUCAUCAUUAAAACUUUUCAGAUCGUGAUAAACUUUACGCUCAAG-GACAUUGCGGCGCUCUCAGC .........................................(((((.(((((--(((.................)))))))).........(((((((.-....))).))))...))))) ( -16.33) >DroSec_CAF1 11076 93 + 1 GUCACAACUCCCGAUUAGAUCUGGAAUUGGGUUUAUCUUAUGAUGAUCUAUGCGAUGGUCAUUAAAAGUUGUC---------------------CCAAGGGACGUUGUGC---UCC--G- (.(((((((((((((...))).....(((((.....(((.((((((((........)))))))).)))....)---------------------)))))))).)))))))---...--.- ( -30.90) >DroEre_CAF1 9002 92 + 1 GUCACAACUCCCGAUUAGAUCUGGAAUUGGGUUUAUCUUAUGAUGAUCUAUGCGCUGCUCAUUAAAAGUUCUC---------------------CCAAG-GACGUUGUGC---UCC--G- (.(((((((((.(((...))).))).(((((.....(((.((((((.(........).)))))).)))....)---------------------)))).-...)))))))---...--.- ( -23.40) >DroYak_CAF1 8398 92 + 1 GUCACAACUCCCGAUUAUAUCUGGAAUUGGGUUUAUCUUAUGAUGAUCUAUGCGUUGGUCAUUAAAAGUUCGC---------------------CCAAG-GACGUUGUGC---UCC--G- (.(((((((((.(((...))).))).((((((....(((.((((((((........)))))))).)))...))---------------------)))).-...)))))))---...--.- ( -28.70) >consensus GUCACAACUCCCGAUUAGAUCUGGAAUUGGGUUUAUCUUAUGAUGAUCUAUGCGAUGGUCAUUAAAAGUUCUC_____________________CCAAG_GACGUUGUGC___UCC__G_ ..((((((.(((((((........))))))).....(((.((((((((........)))))))).)))...................................))))))........... (-12.26 = -14.74 + 2.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:55 2006