Locus 8550

Sequence ID 3L_DroMel_CAF1
Location 22,330,605 – 22,330,696
Length 91
Max. P 0.605574
window14014

overview

Window 4

Location 22,330,605 – 22,330,696
Length 91
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 91.84
Mean single sequence MFE -20.48
Consensus MFE -15.23
Energy contribution -15.97
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.74
SVM decision value 0.15
SVM RNA-class probability 0.605574
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22330605 91 - 23771897
AUUUAUAGCUACGGCUGUACAAAUUUGUUCAACAACUUCCAUUUAAUUAUACGAAUGAAGCGAAACAUUUAAUUUGGUUCGUUUGAAC----GCU
...((((((....)))))).......((((.........(((((........)))))(((((((.((.......)).)))))))))))----... ( -20.40)
>DroSec_CAF1 9955 91 - 1
AUUUAUAGCUACGGCUGUACAAAUUUGUUCAACAACUUCCAUUUAAUUAUACGAAUGAAGCGAAACAUUUAAUUUGGUUCGUUUGAAC----GCU
...((((((....)))))).......((((.........(((((........)))))(((((((.((.......)).)))))))))))----... ( -20.40)
>DroEre_CAF1 7865 95 - 1
AUUUAUAGCUACGGCUGUACAAAUUUGUUCAACAACUUCCAUUUAAUUAUACGAAUGAAGCGAAACAUUUAAUUUUGUUCGUUUGAUGAGGGGGA
...((((((....))))))................(((((.....((((.(((((..(((..((....))..)))..))))).))))..))))). ( -21.70)
>DroYak_CAF1 7351 94 - 1
GUUUAUAGCUACGGCUGUACAAAUUUGUUUAACAACUUCCAUUUAAUUAUACCAAUGAAGCGAAACAUUUAAUUUUGUUCGUUUGAGGAGG-GAA
...((((((....))))))................(((((.......(((....)))(((((((.((........)))))))))..)))))-... ( -19.40)
>consensus
AUUUAUAGCUACGGCUGUACAAAUUUGUUCAACAACUUCCAUUUAAUUAUACGAAUGAAGCGAAACAUUUAAUUUGGUUCGUUUGAAC____GCA
...((((((....))))))................................((((((((.((((........)))).)))))))).......... (-15.23 = -15.97 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:49 2006