Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,579,800 – 2,579,920 |
Length | 120 |
Max. P | 0.957229 |
Location | 2,579,800 – 2,579,920 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.00 |
Mean single sequence MFE | -43.43 |
Consensus MFE | -29.17 |
Energy contribution | -30.46 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.19 |
Mean z-score | -2.78 |
Structure conservation index | 0.67 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957229 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2579800 120 + 23771897 UGCCGCCAAUGCCCCCACUACCACCACCGGGCAGUGGCGGCAAAAAGCCGGCAAUGGUACCUAACUUCAUCAAACGCAACAAGAUAUGUGCCGGACAAACGGUUCCCUGUCCCCCGCCAC ((((((((.(((((..............))))).)))))))).......(((...(((((.((.(((.............))).)).)))))(((((..........)))))...))).. ( -42.06) >DroGri_CAF1 7307 120 + 1 GAGAGUCGAUGCCGCCAUUGCCCGAGAUGGGCAAAAAGAUGAAGAAAGCGGAUAUGGUGCCAAAUUUCGUUUUGCGCAACAUAAAGUGUGCACGGAACACAGUGCGCUGUCCGCCGCCAC .............((..((((((.....)))))).............(((((((((.(((((((......)))).))).))).....((((((........)))))).)))))).))... ( -36.30) >DroSec_CAF1 6788 120 + 1 UGCCGCCAAUGCCCCCACUACCACCACCGGGCAGUGGCGGCAAAAAGCCGGCCAUGGUACCCAACUUCAUCAAACGCAACAAGUUGUGUGCCGGACAGACGGUUCCCUGUCCCCCGCCAC ((((((((.(((((..............))))).)))))))).......(((...(((((.((((((.............)))))).)))))((((((........))))))...))).. ( -50.76) >DroSim_CAF1 6777 120 + 1 UGCCGCCAAUGCCCCCACUACCACCACCGGGCAGUGGCGGCAAAAAGCCGGCCAUGGUACCCAACUUCAUCAAACGCAACAAGUUGUGUGCCGGACAGACGGUACCCUGUCCCCCGCCAC ((((((((.(((((..............))))).)))))))).......(((...(((((.((((((.............)))))).)))))((((((........))))))...))).. ( -50.76) >DroEre_CAF1 4090 120 + 1 UGCCGCCAAUGCCGCCACUUCCACCGGCGGGUAGUGGCCGCAAAAAGCCGACCAUGGUACCCAAUUUCAUUAAGCGCAACAGGAUGUGCGCCGGACAGACGAUUCCCUGUCCUCCGCCAC (((.((((.(((((((.........))).)))).)))).)))............((((...............(((((........))))).((((((........))))))...)))). ( -40.30) >DroYak_CAF1 6788 120 + 1 UGCCGCCAAUGCCCCCACUUCCACCACCGGGCAGUGGCGGCAAAAAGCCCACCAUGGUGCCGAAUUUCAUUAAACGCAACCGGAUGUGCGCCGGAAAGACGAUUCCCUGUCCUCCGCCAC ((((((((.(((((..............))))).))))))))....((.(((..((((((...............)).))))...))).))((((..((((......)))).)))).... ( -40.40) >consensus UGCCGCCAAUGCCCCCACUACCACCACCGGGCAGUGGCGGCAAAAAGCCGGCCAUGGUACCCAACUUCAUCAAACGCAACAAGAUGUGUGCCGGACAGACGGUUCCCUGUCCCCCGCCAC ((((((((.(((((..............))))).))))))))............((((................((((........))))..((((((........))))))...)))). (-29.17 = -30.46 + 1.28)
Location | 2,579,800 – 2,579,920 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.00 |
Mean single sequence MFE | -48.17 |
Consensus MFE | -35.80 |
Energy contribution | -36.75 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.39 |
Mean z-score | -1.09 |
Structure conservation index | 0.74 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557066 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2579800 120 - 23771897 GUGGCGGGGGACAGGGAACCGUUUGUCCGGCACAUAUCUUGUUGCGUUUGAUGAAGUUAGGUACCAUUGCCGGCUUUUUGCCGCCACUGCCCGGUGGUGGUAGUGGGGGCAUUGGCGGCA (((.((((((((.(....).)))).)))).)))......((((((.......((((((.((((....)))))))))).((((.(((((((((....).)))))))).))))...)))))) ( -49.50) >DroGri_CAF1 7307 120 - 1 GUGGCGGCGGACAGCGCACUGUGUUCCGUGCACACUUUAUGUUGCGCAAAACGAAAUUUGGCACCAUAUCCGCUUUCUUCAUCUUUUUGCCCAUCUCGGGCAAUGGCGGCAUCGACUCUC ((.((((((((..(.((((........)))).)....((((.(((.((((......))))))).))))))))))............((((((.....))))))..)).)).......... ( -37.40) >DroSec_CAF1 6788 120 - 1 GUGGCGGGGGACAGGGAACCGUCUGUCCGGCACACAACUUGUUGCGUUUGAUGAAGUUGGGUACCAUGGCCGGCUUUUUGCCGCCACUGCCCGGUGGUGGUAGUGGGGGCAUUGGCGGCA (((.((((((((.(....).)))).)))).))).(((((((((......))).)))))).........((((.(....((((.(((((((((....).)))))))).))))..).)))). ( -54.90) >DroSim_CAF1 6777 120 - 1 GUGGCGGGGGACAGGGUACCGUCUGUCCGGCACACAACUUGUUGCGUUUGAUGAAGUUGGGUACCAUGGCCGGCUUUUUGCCGCCACUGCCCGGUGGUGGUAGUGGGGGCAUUGGCGGCA (((.((((((((.(....).)))).)))).))).(((((((((......))).)))))).........((((.(....((((.(((((((((....).)))))))).))))..).)))). ( -53.40) >DroEre_CAF1 4090 120 - 1 GUGGCGGAGGACAGGGAAUCGUCUGUCCGGCGCACAUCCUGUUGCGCUUAAUGAAAUUGGGUACCAUGGUCGGCUUUUUGCGGCCACUACCCGCCGGUGGAAGUGGCGGCAUUGGCGGCA ((.((.(((((((((......)))))))((((((........))))))..........(((((...((((((.(.....))))))).)))))((((.(......).)))).)).)).)). ( -47.30) >DroYak_CAF1 6788 120 - 1 GUGGCGGAGGACAGGGAAUCGUCUUUCCGGCGCACAUCCGGUUGCGUUUAAUGAAAUUCGGCACCAUGGUGGGCUUUUUGCCGCCACUGCCCGGUGGUGGAAGUGGGGGCAUUGGCGGCA (((.((((((((........))).))))).))).((((.(((.((...............)))))..)))).......((((((((.(((((..............))))).)))))))) ( -46.50) >consensus GUGGCGGGGGACAGGGAACCGUCUGUCCGGCACACAUCUUGUUGCGUUUAAUGAAAUUGGGUACCAUGGCCGGCUUUUUGCCGCCACUGCCCGGUGGUGGUAGUGGGGGCAUUGGCGGCA (((.((((((((.(....).)))).)))).))).......(((((.......((((((((.(.....).)))))))).((((.((((((((.......)))))))).))))...))))). (-35.80 = -36.75 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:50 2006