Locus 8549

Sequence ID 3L_DroMel_CAF1
Location 22,330,267 – 22,330,380
Length 113
Max. P 0.531063
window14013

overview

Window 3

Location 22,330,267 – 22,330,380
Length 113
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 87.67
Mean single sequence MFE -28.05
Consensus MFE -20.39
Energy contribution -21.08
Covariance contribution 0.69
Combinations/Pair 1.09
Mean z-score -1.44
Structure conservation index 0.73
SVM decision value -0.00
SVM RNA-class probability 0.531063
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22330267 113 + 23771897
UUAGAGUCCGGGCACGCGGGGAGCGGAAAGUUUGGUCGAUUUUUUGACAUAUUAAUUGAUGUGUCAAUAUUUGCAUAAAUCAAUACAGUGA---CGAAACAGAGUGGCGAUGCAGA
.....(.((((((.(((.....)))....)))))).)......((((((((((....))))))))))..(((((((...........((.(---(........)).)).))))))) ( -28.60)
>DroSec_CAF1 9632 113 + 1
UUAGAGACCGGGCACGCGGGGAGCGGAAAGUUUGGUCGAUUUUUUGACAUAUUAAUUGAUGUGUCAAUAUUUGCUUAAAUCAAUACAGUGA---CGAAACAGAGUGACGAUACAGA
.....((((((((.(((.....)))....))))))))(((((.((((((((((....)))))))))).........)))))......((.(---(........)).))........ ( -29.40)
>DroEre_CAF1 7553 106 + 1
UUAGAGGCCGGGCAUGCGGGGAGCGGAAAC-UUGGUCAAUUUUUUGACAUAUUAAUUGAUGUGUCAAUAUUUGCAUAAAUCAAUACAGUGA---CGAAACAGAGUGCCGA------
.....(((((((..(((.....)))....)-))))))......((((((((((....)))))))))).....((((...(((......)))---(......).))))...------ ( -23.40)
>DroYak_CAF1 7044 110 + 1
UUAGAGGCCGGGCACGCGGGGAGCGGAAAGUUUGGUAAAUUUUUUGACAUAUUAAUAGAUGUGUCAAUAUAUGCAUAAAUCAAUAUGCAGAAUGCAAAACAGAGUGGCGA------
......((((..(.(((.....)))....((((.(((......((((((((((....))))))))))....((((((......))))))...))).)))).)..))))..------ ( -30.80)
>consensus
UUAGAGGCCGGGCACGCGGGGAGCGGAAAGUUUGGUCAAUUUUUUGACAUAUUAAUUGAUGUGUCAAUAUUUGCAUAAAUCAAUACAGUGA___CGAAACAGAGUGGCGA______
...((((((((((.(((.....)))....))))))))......((((((((((....))))))))))............))................................... (-20.39 = -21.08 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:48 2006