Locus 8547

Sequence ID 3L_DroMel_CAF1
Location 22,329,245 – 22,329,363
Length 118
Max. P 0.975833
window14008

overview

Window 8

Location 22,329,245 – 22,329,363
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.23
Mean single sequence MFE -17.77
Consensus MFE -14.02
Energy contribution -14.53
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.23
Structure conservation index 0.79
SVM decision value 1.76
SVM RNA-class probability 0.975833
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22329245 118 + 23771897
GACUCGUAAAGUAUUUCCAUUCAUCUGCGUUAUU--UCACAAGUAAUUAAAAUUUUUCCCACAUAAAAUCUCGAGGGACCGAGUCCUCCUCCUCCCUCCCAGCUGCCCAUCCAUAUCCAC
.(((.((.(((((...(((......)).).))))--).)).)))............................((((((..(((.....))).))))))...................... ( -14.20)
>DroSec_CAF1 8599 104 + 1
GACUCAUAAAUAAU----------------GCUUUAUCACAAGUAAUUAAAAUUUGUCCCACAUAACAUCUCGUGGGACCGAGUCCUCCUCCUCCCGCCCAGCUGCCCAUCCACAUCCAC
(((((........(----------------((((......)))))..........(((((((..........))))))).)))))................................... ( -20.40)
>DroSim_CAF1 8060 102 + 1
GACUCAUAAAGCAU----------------UAUU--UCACAAGUAAUUAAAAUUUGUCCCACAUAACAUCUCGUGGGACCGAGUCCUCCUCCUCCCGCCCAGCUGCCCAUCCACAUCCAC
(((((.......((----------------((((--.....))))))........(((((((..........))))))).)))))................................... ( -18.50)
>DroEre_CAF1 6500 115 + 1
GACUCAUAAGGCAUUUCCAUUCAUCUGCAUUAUA--UCCCAAGUAAUUAAAAUUUGUCCCACAUCAAAUCCCGUGGGAACGAGUCCUC---CUACCUCCCAGCUGCCCACCCACAUCCAC
(((((((((.(((............))).)))).--...(((((.......)))))((((((..........))))))..)))))...---............................. ( -18.00)
>consensus
GACUCAUAAAGCAU________________UAUU__UCACAAGUAAUUAAAAUUUGUCCCACAUAAAAUCUCGUGGGACCGAGUCCUCCUCCUCCCGCCCAGCUGCCCAUCCACAUCCAC
(((((..................................(((((.......)))))((((((..........))))))..)))))................................... (-14.02 = -14.53 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:43 2006