Locus 8545

Sequence ID 3L_DroMel_CAF1
Location 22,325,636 – 22,325,746
Length 110
Max. P 0.912845
window14006

overview

Window 6

Location 22,325,636 – 22,325,746
Length 110
Sequences 3
Columns 110
Reading direction reverse
Mean pairwise identity 97.58
Mean single sequence MFE -33.43
Consensus MFE -32.72
Energy contribution -32.50
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -2.08
Structure conservation index 0.98
SVM decision value 1.09
SVM RNA-class probability 0.912845
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22325636 110 - 23771897
CAGGAGCCAAGCUGGAGUGGAAAUUAAAUAAAAUUGGCAACCCUAAAUAAGCCGUGAGGUCUUAAUUGGGGCACGGCAAUGGGCGGUGCCAUGGGGAAAAUUACGGGCUU
...(((((..((..((((....)))........)..))..(((((..((((((....)).)))).....(((((.((.....)).))))).))))).........))))) ( -37.50)
>DroSec_CAF1 4885 110 - 1
CAGGAGCCAAGCUUGAGUGGAAAUUAAAUAAAAUUGGCAACCCUAAAUAAGCUGUGAGGUCUUAAUUGGGGCACGGCAAUGGGCGGUGCCAUGGGGAAAACGACGGGCUU
...(((((..(((..(((....)))..........)))..(((((..((((((....)).)))).....(((((.((.....)).))))).))))).........))))) ( -30.90)
>DroSim_CAF1 4382 110 - 1
CAGGAGCCAAGCUGGAGUGGAAAUUAAAUAAAAUUGGCAACCCUAAAUAAGCUGUGAGGUCUUAAUUGGGGCACGGCAAUGGGCGGUGCCAUGGGGAAAACGACGGGCUU
...(((((..((..((((....)))........)..))..(((((..((((((....)).)))).....(((((.((.....)).))))).))))).........))))) ( -31.90)
>consensus
CAGGAGCCAAGCUGGAGUGGAAAUUAAAUAAAAUUGGCAACCCUAAAUAAGCUGUGAGGUCUUAAUUGGGGCACGGCAAUGGGCGGUGCCAUGGGGAAAACGACGGGCUU
...(((((..((..((((....)))........)..))..(((((..((((((....)).)))).....(((((.((.....)).))))).))))).........))))) (-32.72 = -32.50 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:41 2006