| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,320,624 – 22,320,731 |
| Length | 107 |
| Max. P | 0.572123 |
| Location | 22,320,624 – 22,320,731 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.15 |
| Mean single sequence MFE | -35.47 |
| Consensus MFE | -29.48 |
| Energy contribution | -30.23 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572123 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22320624 107 - 23771897 -------------UAGGAAAUGAGCAGCUUAAAUGUUUAGCCAAACGGUAAAGCGGUGUACAUUUCCCAACCAAAGCCGGCCGAGAGCACAGAGGAGGCAUAACUCCGUGGCAGGCUGCC -------------..(((((((.(((((((...(((((....)))))...))))..))).))))))).......((((.((((..........((((......)))).)))).))))... ( -33.80) >DroSec_CAF1 79319 120 - 1 UUCGUUGAUUUCCUAGGAAAUGAGCAGCUUAAAUGUUUAGCCAAACGGUAAAGCUGUGUACAUUUCCCAACCAAAGUCGGCCGAGAGCACAGAGGAGGCAUAACUCCGUGGCAGGCUGAC ...((((........(((((((.(((((((...(((((....)))))...)))))))...)))))))))))....(((((((....((.((..((((......)))).)))).))))))) ( -41.90) >DroEre_CAF1 77708 119 - 1 -UCAUUGAUUUCCUAGGAAAUGAGCAGCUUAAAUGUUUAGCCAAACGGUAAAGCGGUGUACAUUUCCCAACCAAAGCCGGCCGAGAGCACAGAGGAGGCAUAACUUCAUGGCAGGCUGCC -....(.(((((....))))).)(((((((....((((.(((....))).))))(((............)))...((((((.....)).....((((......)))).))))))))))). ( -31.90) >DroYak_CAF1 57732 112 - 1 -UCGUUGAUUUCCUAGGAAAUGAGCAGCUUAAAUGUUUAGCCA-------AAGCGGUGUACAUUUCCCAGCCAAAGCCGGCCGAGAGCACAGGGGAGGCAUAACUUCAUGGCAGGCUGCC -....(.(((((....))))).)(((((((((((((...(((.-------....)))..))))))....((((...((.((.....))...))((((......)))).))))))))))). ( -34.30) >consensus _UCGUUGAUUUCCUAGGAAAUGAGCAGCUUAAAUGUUUAGCCAAACGGUAAAGCGGUGUACAUUUCCCAACCAAAGCCGGCCGAGAGCACAGAGGAGGCAUAACUCCAUGGCAGGCUGCC ...............(((((((.(((((((...(((((....)))))...))))..))).)))))))..........(((((....((.((..((((......)))).)))).))))).. (-29.48 = -30.23 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:30 2006