Locus 854

Sequence ID 3L_DroMel_CAF1
Location 2,578,619 – 2,578,714
Length 95
Max. P 0.657744
window1312

overview

Window 2

Location 2,578,619 – 2,578,714
Length 95
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 83.29
Mean single sequence MFE -28.28
Consensus MFE -20.75
Energy contribution -21.87
Covariance contribution 1.11
Combinations/Pair 1.12
Mean z-score -1.90
Structure conservation index 0.73
SVM decision value 0.26
SVM RNA-class probability 0.657744
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2578619 95 - 23771897
GGGGUCAGCUCUCCUCAGCUGACCACCAAU--AGGCACUACGAAAAUCUCGGAUCAGCAACAUGGUCCUUCCUUUGCUAUUGCACGUUGACAAGU-------AG
((((((((((......)))))))).))...--.....((((.........((((((......))))))......(((....))).........))-------)) ( -30.20)
>DroSec_CAF1 5604 91 - 1
GGGGUCAGCUCUCCUCAGCUGACCACCAAU--AGGCACUACGAAAAUCUCGGAUCAGCAACAUGGUCC----UUUGCUAUUGCACGUUGACAAGU-------AG
((((((((((......)))))))).))...--.....((((.........((((((......))))))----..(((....))).........))-------)) ( -30.20)
>DroSim_CAF1 5601 91 - 1
GGGGUCAGCUCUUCUCAGCUGACCACCAAU--AGGCACUACGAAAAUCUCGGAUCAGCAACAUGGUCC----UUUGCUAUUGCACGUUGACAAGU-------AG
((((((((((......)))))))).))...--.....((((.........((((((......))))))----..(((....))).........))-------)) ( -30.20)
>DroEre_CAF1 2933 91 - 1
GUGGUCAGCUCUUCUCUGCUGACCACCAAU--AGGCACUACGAAAAUUUCGGAUCAGCAACAUGGUCC----UUUGCUAUUGCACGUUGACAAGU-------AG
(((((((((........)))))))))((((--..(((.((((((......((((((......))))))----)))).)).)))..))))......-------.. ( -30.40)
>DroYak_CAF1 5633 90 - 1
GUGGCCAGCUUUUCUCUGCUGACCACCAAU--AGGCACUACGAAAAUUUCGGAUCAGCA-CAUGGUCC----UUUGCUAUUGCACGUUGACAAGU-------UG
((((.((((........)))).))))((((--..(((.((((((......((((((...-..))))))----)))).)).)))..))))......-------.. ( -25.20)
>DroAna_CAF1 4904 91 - 1
GUGAUCAGCUGU--------GGGCACUGAUGAAGGCACUAC-ACGAUUUUGGAUCCGCAACGUGGUCC----UGGGUUAUUGCACGUUGUCAUGUCAGGGGAAG
((((.(((((((--------((((.((.....)))).))))-).((((..(((.((((...)))))))----..)))).......))))))))........... ( -23.50)
>consensus
GGGGUCAGCUCUUCUCAGCUGACCACCAAU__AGGCACUACGAAAAUCUCGGAUCAGCAACAUGGUCC____UUUGCUAUUGCACGUUGACAAGU_______AG
..(((((((........)))))))..((((....(((.((((((......((((((......))))))....)))).)).)))..))))............... (-20.75 = -21.87 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:47 2006