Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,318,116 – 22,318,236 |
Length | 120 |
Max. P | 0.545410 |
Location | 22,318,116 – 22,318,236 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.17 |
Mean single sequence MFE | -32.09 |
Consensus MFE | -30.96 |
Energy contribution | -31.02 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -1.75 |
Structure conservation index | 0.96 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545410 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22318116 120 - 23771897 UUCUCAUUUCCAUUCUCAUUGCUUUUGCCUUAUGCCUUGUCAUGCUUAAUUGCUUUGUUAAUUAAAUGUGUUAAGGCUGAGGAAAAAAGGAUAUUAAGGCGCGCAGGUCUGAAAGGGACA .......((((.(((......(((((.(((((.((((((.(((..(((((((......)))))))..))).)))))))))))...)))))......((((......))))))).)))).. ( -31.40) >DroSec_CAF1 76781 120 - 1 UUCUCAUUUCCAUUCUCAUUGCUUUUGCCUUAUGCCUUGUCAUGCUUAAUUGCUUUGUUAAUUAAAUGUGUUAAGGCUGAGGAAAAAAGGAUAUUAAGGCGCGCAGGUCUGAAAGGGACA .......((((.(((......(((((.(((((.((((((.(((..(((((((......)))))))..))).)))))))))))...)))))......((((......))))))).)))).. ( -31.40) >DroEre_CAF1 75071 120 - 1 UUCUCAUUUCCAUUCUCAUUGCUUUCGCCUUAUGCCUUGUCAUGCUUAAUUGCUUUGUUAAUUAAAUGUGUUAAGGCUGAGGAAAAAAGGAUAUUAAGGCGCGCAGGUCUGAAAGGGACA .......((((.(((...((((...(((((((.((((((.(((..(((((((......)))))))..))).)))))).................))))))).))))....))).)))).. ( -31.17) >DroYak_CAF1 55206 120 - 1 UUCUCAUUUCCAUUCUCAUUGCUUUUGCCUUAUGCCUUGUCAUGCUUAAUUGCUUUGUUAAUUAAAUGUGUUAAGGCUGAGGAAAAAGGGAUAUUAAGGCGCGCAGGUCUGAAAGGGACA .......((((.(((..(((.(((((.(((((.((((((.(((..(((((((......)))))))..))).))))))))))).))))).)))....((((......))))))).)))).. ( -34.40) >consensus UUCUCAUUUCCAUUCUCAUUGCUUUUGCCUUAUGCCUUGUCAUGCUUAAUUGCUUUGUUAAUUAAAUGUGUUAAGGCUGAGGAAAAAAGGAUAUUAAGGCGCGCAGGUCUGAAAGGGACA .......((((.(((......(((((.(((((.((((((.(((..(((((((......)))))))..))).)))))))))))...)))))......((((......))))))).)))).. (-30.96 = -31.02 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:24 2006