Locus 8536

Sequence ID 3L_DroMel_CAF1
Location 22,317,305 – 22,317,424
Length 119
Max. P 0.817506
window13986

overview

Window 6

Location 22,317,305 – 22,317,424
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.84
Mean single sequence MFE -30.10
Consensus MFE -24.84
Energy contribution -25.65
Covariance contribution 0.81
Combinations/Pair 1.17
Mean z-score -1.79
Structure conservation index 0.83
SVM decision value 0.67
SVM RNA-class probability 0.817506
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22317305 119 - 23771897
GUUAAUUUGAAGAAUUGUGCAAAAUGUUUGGCCAACCGAUGGACGGACAAGUGAGUGACAGUUGCUGAUGAGUAGACGGCAGAGAAAACACAUGCUUUGAAUUAACAACGGAAAA-AAAA
(((((((..(((...((((((...((((((.(((.....))).))))))..))........((((((.........))))))......))))..)))..))))))).........-.... ( -29.20)
>DroSec_CAF1 75976 119 - 1
GUUAAUUUGAAGAAUUGUGCAAAAUGUUUGGCCAACUGGCGGACGGACAAGUGAGUGACAGUUGCUGAUGAGUAGACGGCAGCGAAAACACAUGCUUUGAAUUAACAACGGAAAA-AAAG
(((((((..(((...((((((...(((((((((....)))...))))))..)).......(((((((.........))))))).....))))..)))..))))))).........-.... ( -33.10)
>DroEre_CAF1 74336 119 - 1
GUUAAUUUGGAGAAUUGUGCAAAAUGUUUUGCCAACUGGCGAACGGACAACUGAGUGACAGUCGCUGAUGAGUAGGCGGCAGCGAAAACACAUGCCUUGAAUUAACAAAGGCAGA-GGAG
(((((((..(....(((.(((((....))))))))..((((..(((....))).(((....((((((.((......)).))))))...))).)))))..))))))).........-.... ( -30.90)
>DroYak_CAF1 54427 120 - 1
GUUAAUUUGAAGAAUUGUGCAAAAUGUUUUGCCUACUGGCGGACGGACAACUGAGUGACAGCUGCUGAUGAGUAAAAGGCAGCGAAACCACAUGCCUUGAACUAGCAAAGGCAAAAAAAG
..........................((((((((....((...(((.((.(((.....))).)))))...(((..(((((((.(....).).))))))..))).))..)))))))).... ( -27.20)
>consensus
GUUAAUUUGAAGAAUUGUGCAAAAUGUUUGGCCAACUGGCGGACGGACAACUGAGUGACAGUUGCUGAUGAGUAGACGGCAGCGAAAACACAUGCCUUGAAUUAACAAAGGAAAA_AAAG
(((((((..(((...((((.....(((((.(((....))))))))...............(((((((.........))))))).....))))..)))..))))))).............. (-24.84 = -25.65 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:23 2006