Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,316,846 – 22,316,954 |
Length | 108 |
Max. P | 0.522318 |
Location | 22,316,846 – 22,316,954 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.34 |
Mean single sequence MFE | -30.98 |
Consensus MFE | -21.74 |
Energy contribution | -22.68 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.11 |
Mean z-score | -1.45 |
Structure conservation index | 0.70 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522318 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22316846 108 + 23771897 GGGGC-----UUUAAGAGCGAGUAGUGAGUAGUGGUAGCAUCGAUUUGCUGUCUUUGACUUUCAAACUGUAGAACUGUUGACAUUUAACGACGACUAU----UCUCUACCAU---UUUCC (((((-----((...))))(.((((.(((((((.((((((......))))(((...(((.(((........)))..))))))........)).)))))----)).)))))..---..))) ( -26.50) >DroSec_CAF1 75511 115 + 1 GGGGC-----UUCAAGAGCGAGUAGUAAGUAGUAGUAGCAUCGAUUUGCUGUCUUUGACUUUCAAACUGCAGAACUGUUGACAUUUAACGACGACUAUUCGUUCUCUACCAUAGCUCUCC (((((-----(...((((((((((((..((((((((((((......))))).))(((.....)))))))).....(((((........))))))))))))))))).......)))))).. ( -34.30) >DroEre_CAF1 73879 117 + 1 GGGGCUUGGCUUCCAGAGCUAGUAGUAAGUGGUAGUAGCAUCGAUCUGCUGUCUUUGACUUUCAAACUGCAAAACUGUUGACAUUUAGCGACGACUACUCGUUCUCUGCCAU---UAUUC (((...((((....(((((.((((((.(((.(((((((((......))))(((...)))......)))))...)))((((........)))).)))))).)))))..)))).---..))) ( -31.20) >DroYak_CAF1 54009 111 + 1 GGGGU-----UUCAAGAGCGAGUAGUAAGUAGUAGAAGCAUCGAUUUGCUGGCUUUGACUUUGAAACUGCAA-AUUGUUGACAUUUAACGACGACUAUUCGUUCUCUACCAU---UUUCU ..(((-----....((((((((((((..((.((.(((.((.((((((((.((.(((......))).))))))-)))).))...))).)).)).))))))))))))..)))..---..... ( -31.90) >consensus GGGGC_____UUCAAGAGCGAGUAGUAAGUAGUAGUAGCAUCGAUUUGCUGUCUUUGACUUUCAAACUGCAAAACUGUUGACAUUUAACGACGACUAUUCGUUCUCUACCAU___UUUCC ..............((((((((((((((((...(((((((......))))).))...))))..............(((((........)))))))))))))))))............... (-21.74 = -22.68 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:22 2006