Locus 8534

Sequence ID 3L_DroMel_CAF1
Location 22,316,449 – 22,316,569
Length 120
Max. P 0.544098
window13984

overview

Window 4

Location 22,316,449 – 22,316,569
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 81.84
Mean single sequence MFE -33.05
Consensus MFE -22.34
Energy contribution -22.97
Covariance contribution 0.63
Combinations/Pair 1.07
Mean z-score -1.59
Structure conservation index 0.68
SVM decision value 0.02
SVM RNA-class probability 0.544098
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22316449 120 - 23771897
UCAUUUUGGAAUCCGAUUCUCCAAUGUUCCUGUUCCUGUUACUGUUUCUGACGCGAAGUCUUUGAGAGAAGAAUGGAGUUGAAUGGAGGGUUCCAAAUGCAUUGGACACGGCUUGCAUUG
......((((((((....(((((.........(((.(((((.......))))).))).(((((....))))).))))).........))))))))(((((((((....)))..)))))). ( -30.62)
>DroSec_CAF1 75124 113 - 1
UCAUUUU-GAAUCCGAUUCUCCACUGUUU------CUGUUUCUGUUUCUGACUCCAAGUCUUCACGAGAAGAAUAGAGCUGAAUAGAGGGUUCAAAAUGCAUUGGCCACGGCUUGUAUUG
.((((((-((((((((..(......)..)------)....(((((((..(.(((....(((((....)))))...)))).))))))))))))))))))).((.(((....))).)).... ( -31.80)
>DroEre_CAF1 73483 117 - 1
UCAUU-UGGAAUCCGAUUCUCCACUGUUUCUGUUUCUGUAUCUGUUUCUGACUCCAAGUCUUCGGGAGAAGAAUGGAGCUGA--GAAGGGUUCCAAAUGCAUUGGCCACGGCUUGUAUUG
.((((-((((((((((..(......)..))...............((((.((((((..(((((....))))).))))).).)--))))))))))))))).((.(((....))).)).... ( -38.60)
>DroYak_CAF1 53625 106 - 1
UCAUUUUGGAAUCCGAUUCUCCAGUGUUUCUGU------------UUUUGACUCAAAGUCUUCGGGAGAUGAAUGGAGCUGA--GAAGGGUUCCAAAUGCAUUGGCUACAGCUUGUAUUG
......((((((((..(((((((...((((((.------------....(((.....)))..)))))).....)))))..))--...))))))))((((((..(((....))))))))). ( -31.20)
>consensus
UCAUUUUGGAAUCCGAUUCUCCACUGUUUCUGU__CUGUUUCUGUUUCUGACUCCAAGUCUUCGGGAGAAGAAUGGAGCUGA__GAAGGGUUCCAAAUGCAUUGGCCACGGCUUGUAUUG
......((((((((....(((((..(((.....................)))......(((((....))))).))))).........))))))))((((((..(((....))))))))). (-22.34 = -22.97 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:20 2006