Locus 8533

Sequence ID 3L_DroMel_CAF1
Location 22,315,909 – 22,316,029
Length 120
Max. P 0.720546
window13983

overview

Window 3

Location 22,315,909 – 22,316,029
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -37.86
Consensus MFE -29.77
Energy contribution -31.40
Covariance contribution 1.63
Combinations/Pair 1.03
Mean z-score -2.08
Structure conservation index 0.79
SVM decision value 0.40
SVM RNA-class probability 0.720546
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22315909 120 - 23771897
AUAGUUUCUUUUCGGGAUGCAGAGGAAAACCGCAGCCCAGCCCCCGGGGAGAAGUGCGGUCGGAAGGGUUGCAAACUAUGGAAAUUCAAAAAGAAAUCCAAUUCUAAAUGCUCGGCCGCA
....((((((..((((.......((....))((......)).))))..))))))((((((((..((.(((........((((..(((.....))).))))......))).)))))))))) ( -36.54)
>DroSec_CAF1 74603 120 - 1
AUAGUUUCUUUUCGGGAUGCAGCGAAAAACCGCAGACCAUCCCCCGGGGAGAAGUGCGGUCGGAAGGGUUGCAAACGAUGGAAAUUGAAAAAGAAAUCCAAUUCUAAAUACUCGGCCGCA
....((((((..(((((((..(((......)))....))))))..)..))))))(((((((((............((((....))))....((((......))))......))))))))) ( -37.50)
>DroEre_CAF1 72962 120 - 1
AUAGUUUCUUUUCGGGAUGCAGCGAAAAACCGCAGCUCAUCCCCAGGGGAGAAGUGCGGUCGGAAGGGUUGCAAACGAUGGAAAUUGAAAAAGAAAUCCAAUUCUAAAUGCUCCGCCGCA
....((((((..(((((((.(((...........)))))))))..)..))))))(((((.((((.(.(((.....((((....))))....((((......)))).))).)))))))))) ( -39.80)
>DroYak_CAF1 53066 120 - 1
AUAGUUUCUUUUCGGGAUGCAGCGAAAAACCGCAGGCCAUCCCCUGGGGCAAAGUGCGGUCGGAAGGGUUGCAAACAAUGGAAAUUGAAAAAGAAAUCCAAUUGUAAAUGCGCGGCCGCA
...((..(.....(((((((.(((......)))..).))))))..)..))....((((((((...(.(((....((((((((..((....))....))).))))).))).).)))))))) ( -37.60)
>consensus
AUAGUUUCUUUUCGGGAUGCAGCGAAAAACCGCAGCCCAUCCCCCGGGGAGAAGUGCGGUCGGAAGGGUUGCAAACGAUGGAAAUUGAAAAAGAAAUCCAAUUCUAAAUGCUCGGCCGCA
....((((((..(((((((..(((......)))....))))))..)..))))))((((((((...(((((.....((((....)))).......))))).((.....))...)))))))) (-29.77 = -31.40 +   1.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:19 2006