| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,577,788 – 2,577,882 |
| Length | 94 |
| Max. P | 0.550068 |
| Location | 2,577,788 – 2,577,882 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 83.51 |
| Mean single sequence MFE | -32.52 |
| Consensus MFE | -25.83 |
| Energy contribution | -24.17 |
| Covariance contribution | -1.66 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550068 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2577788 94 - 23771897 GGAAACUCCUCCGGCGGUUUGUCCUCUACAACUGGCAAUCCACCCGCCACCUUUGGCUUAAGUUUCCGGUUAACCGGCGGGCAGUCCGCCUGCU (((((((.....((.((.(((.((.........))))).)).)).((((....))))...)))))))((....))(((((((.....))))))) ( -35.30) >DroPse_CAF1 5305 91 - 1 GGGAACUCCUCCGGGGGCUUAUCCUCCAAGGCUGGAGUG---CCGGCCGCCUUUGGUUUCAGUUUGCGGUUCACUGGCGGACAAUCCAUUUGCU .((((((((.(((((((.....)))))..))..)))))(---((((((((..(((....)))...))))....)))))......)))....... ( -31.40) >DroSec_CAF1 4777 94 - 1 GGGAACUCCUCCGGCGGUUUGUCCUCUACAACUGGCAAUCCUCCCGCCACCUUUGGCUUAAGUUUUCGGUUAACUGGCGGGCAGUCUGCCUGCU (..((((.....((.((.(((.((.........))))).)).)).((((....))))...))))..)........(((((((.....))))))) ( -30.40) >DroSim_CAF1 4774 94 - 1 GGAAACUCCUCCGGCGGUUUGUCCUCUACAACUGGCAAUCCUCCCGCCACCUUUGGCUUAAGUUUUCGGUUAACUGGCGGGCAGUCUGCCUGCU (((((((.....((.((.(((.((.........))))).)).)).((((....))))...)))))))........(((((((.....))))))) ( -30.60) >DroYak_CAF1 4805 94 - 1 GGAAAUUCCUCCGGCGGUUUGUCCUCUACAACUGGCAAUCCUCCCGCCACCUUUGGCUUAAGUUUGCGGUUCACUGGCGGGCAAUCCGCCUGCU (((......)))(((((.((((((.(((.(((((.(((..((...((((....))))...)).))))))))...))).)))))).))))).... ( -34.20) >DroPer_CAF1 4027 91 - 1 GGGAACUCCUCCGGGGGCUUAUCCUCCACGGCUGGAGUG---CCGGCCGCCUUUGGUUUCAGUUUGCGGUUCACUGGCGGACAAUCCAUUUGCU .((((((((.(((((((......)))).)))..)))))(---((((((((..(((....)))...))))....)))))......)))....... ( -33.20) >consensus GGAAACUCCUCCGGCGGUUUGUCCUCUACAACUGGCAAUCCUCCCGCCACCUUUGGCUUAAGUUUGCGGUUAACUGGCGGGCAAUCCGCCUGCU (((......)))(((((.((((((.(((.(((((...........((((....)))).........)))))...))).)))))).))))).... (-25.83 = -24.17 + -1.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:46 2006