| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,313,678 – 22,313,798 |
| Length | 120 |
| Max. P | 0.715711 |
| Location | 22,313,678 – 22,313,798 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.27 |
| Mean single sequence MFE | -42.55 |
| Consensus MFE | -33.22 |
| Energy contribution | -34.41 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.715711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22313678 120 + 23771897 ACGAAAGCCAACUGGGCACUUGAAAUGCGGAUGAGCCGAGCAAUGGCCAAAUGCAAGGGGAAAAGGGCAACUUGGUCAUUGUCUUUGGCCAGCCCGGUCUGGGCUAUUGUUUCAUUCAUG ((((.((((.(((((((..(((.....(((.....)))..)))((((((((.((((...((..(((....)))..)).)))).)))))))))))))))...)))).)))).......... ( -48.50) >DroSec_CAF1 72374 119 + 1 ACGAAAGCCAACUGGGCACUUGAAAUGCGGAUGAGCCGAGCAAUGGCCAAAUGCAAGGGGA-AAGGGCAACUCCGUCAUUGUCUUUGGCCGGCCUGGUCUUGGCUAUUGUUUCAUUCAUG ((((.(((((((..(((..(((.....(((.....)))..)))((((((((.((((...((-..((....))...)).)))).)))))))))))..))..))))).)))).......... ( -42.90) >DroEre_CAF1 70755 116 + 1 ACGAAAGCCAAAUGGGCACUUGAAAUGCGGAUGAGCCGAGCAAUGGCCAAAUGCAAGGGGAAAAGGGCAACUCCGUCAUUGUCUUUGGC----CUGGUCUUGGCUAUUGUUUCAUUCAUG ..(((.(((.....)))...((((((...(((.((((((((...(((((((.((((...((...((....))...)).)))).))))))----)..).)))))))))))))))))))... ( -40.10) >DroYak_CAF1 50855 116 + 1 ACGAAAGCCAACUGGGCACUUCAAAUGCGGAUGAGCCGAGCAAUGGCCAAAUGCAAGGGGAAAAGGGCAACUCCGUCAUUGUCUUUGGC----CUGGUCUUGGCAAUUGUUUCAUUCAUG ..(((.(((.....)))..)))......(((((((((((((...(((((((.((((...((...((....))...)).)))).))))))----)..).)))))).......))))))... ( -38.71) >consensus ACGAAAGCCAACUGGGCACUUGAAAUGCGGAUGAGCCGAGCAAUGGCCAAAUGCAAGGGGAAAAGGGCAACUCCGUCAUUGUCUUUGGC____CUGGUCUUGGCUAUUGUUUCAUUCAUG ......(((.....)))...........(((((((((((((..((((((((.((((...((...((....))...)).)))).)))))))).....).)))))).......))))))... (-33.22 = -34.41 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:09 2006