Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,312,291 – 22,312,411 |
Length | 120 |
Max. P | 0.973134 |
Location | 22,312,291 – 22,312,411 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.92 |
Mean single sequence MFE | -35.82 |
Consensus MFE | -29.94 |
Energy contribution | -30.78 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.11 |
Mean z-score | -1.97 |
Structure conservation index | 0.84 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973134 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22312291 120 - 23771897 GCUCGGAUUAUGCAGCUGCAUAAUUAGUGCGAAAAGGGAAAAAACUAUGACUUCGCUGCCUUGGAUGUGCAGCUCGCAUAGUUUUUGGGGCAACAAAAAGAAAACUGCUCCAGACAAAGG .....(((((((((((((((((.((((.(((((...((......)).....)))))....)))).))))))))).))))))))(((((((((.............)))))))))...... ( -37.82) >DroSec_CAF1 70991 119 - 1 GCUCGGAUUAUGCAGCUGCAUAAUUAGUGCGAAAAGGGAAAAAACUAUGACUUCGCUGCCUGGGAUGUGCAGCUCGCAUAGUUUUUG-GGCAACAAAAAGAAGACGGCUCCAGACAAAGG ((((((((((((((((((((((.((((.(((((...((......)).....)))))...))))..))))))))).))))))))..))-)))............................. ( -35.80) >DroSim_CAF1 52703 120 - 1 GCUCGGAUUAUGCAGCUGCAUAAUUAGUGCGAAAAGGGAAAAAACUAUGACUUCGCUGCCUGGGAUGUGCAGCUCGCAUAGUUUUUGGGGCAACAAAAAGAAGACGGCUCCAGACAAAGG .....(((((((((((((((((.((((.(((((...((......)).....)))))...))))..))))))))).))))))))((((((((..(........)...))))))))...... ( -38.70) >DroEre_CAF1 69382 120 - 1 GCUCGGAUUAUGCAGCUGCAUAAUUAGUGCGAAAAGGGAAAAAACUAUGGCUUCGCUGGCUGGGAUGUGCAGCCUGAAUGGUUUUUGGGGCAACAAAAAGGAGACGGCUCCAGACAAAGG .....((((((.((((((((((.((((((((((...((......)).....)))))..)))))..))))))).))).))))))((((((((........(....).))))))))...... ( -34.80) >DroYak_CAF1 49478 120 - 1 GCUCGGAUUAUGCAUCUGCAUAAUUAGUGCGCAAAGGAAAAAAACUAUGACUUUGCUGUCUGGGAUGUGCAGAUUGAAUUGUUUUUGGCGCAACAAAAAGUAGACGGCUCUAGACAAAGG ((.(.((((((((....)))))))).).))((((((..(........)..))))))(((((((..(((((.(((......)))....)))))......(((.....)))))))))).... ( -32.00) >consensus GCUCGGAUUAUGCAGCUGCAUAAUUAGUGCGAAAAGGGAAAAAACUAUGACUUCGCUGCCUGGGAUGUGCAGCUCGCAUAGUUUUUGGGGCAACAAAAAGAAGACGGCUCCAGACAAAGG .....(((((((((((((((((.((((.(((((.((........)).....)))))...))))..))))))))).))))))))((((((((...............))))))))...... (-29.94 = -30.78 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:18:03 2006