| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,309,571 – 22,309,672 |
| Length | 101 |
| Max. P | 0.810829 |
| Location | 22,309,571 – 22,309,672 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.66 |
| Mean single sequence MFE | -30.84 |
| Consensus MFE | -23.30 |
| Energy contribution | -23.18 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.810829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22309571 101 + 23771897 AAGACCAAUUAGGCCUAAUGUGCGCUUGCAGAGGCAACGCCACGUAAGUGACUUGUCAUUUGAAUUGAAACCUCGGGUCAUUUUAUGGCCAAUGUACACAG------------------- ...........((((..(((((.((((((....)))).)))))))(((((((((((((.......))).....))))))))))...))))...........------------------- ( -28.10) >DroSec_CAF1 68275 101 + 1 AAGACCAAUUAGGCCUAAUGUGCGCUUGCAGAGGCAACGCCACGUAAGUGACUUGUCAUUUGAAUUGAAACCUCGGGUCAUUUUAUGGCCAAUGUACACGG------------------- ...........((((..(((((.((((((....)))).)))))))(((((((((((((.......))).....))))))))))...))))...........------------------- ( -28.10) >DroSim_CAF1 50316 101 + 1 AAGACCAAUUAGGCCUAAUGUGCGCUUGCAGAGGCAACGCCACGUAAGUGACUUGUCAUUUGAAUUGAAACCUCGGGUCAUUUUAUGGCCAAUGUACACGG------------------- ...........((((..(((((.((((((....)))).)))))))(((((((((((((.......))).....))))))))))...))))...........------------------- ( -28.10) >DroEre_CAF1 66753 101 + 1 AAGACCAAUUAGGCCUAAUGUGCGCUUCUAGAGGUAACGCCACGUAAGUGACUUGUCAUUUAAAUUGAAACCUCGGGCCAUUUUAUGGCCCAUGUACACGC------------------- .((.((.....)).))..((((((......(((((.....(((....))).....(((.......))).)))))(((((((...))))))).))))))...------------------- ( -31.20) >DroYak_CAF1 43860 120 + 1 AAGACCAAUUAGGCCUAAUGUGUGCUUCUACAGGCAACGCCACGUAAGUGACUUGUCAUUUAAAUUGAAACCCCGGGUCAUUUUAUGGCGAAUGUACACACGUGUUUAGGCCCAUAAAAA ...........(((((((((((((((((....(....)((((...(((((((((((((.......))).....))))))))))..))))))).))))))).....)))))))........ ( -38.70) >consensus AAGACCAAUUAGGCCUAAUGUGCGCUUGCAGAGGCAACGCCACGUAAGUGACUUGUCAUUUGAAUUGAAACCUCGGGUCAUUUUAUGGCCAAUGUACACGG___________________ .((.((.....)).))..(((((((((....))))...((((...(((((((((((((.......))).....))))))))))..))))....)))))...................... (-23.30 = -23.18 + -0.12)
| Location | 22,309,571 – 22,309,672 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.66 |
| Mean single sequence MFE | -29.00 |
| Consensus MFE | -23.08 |
| Energy contribution | -22.76 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.558659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22309571 101 - 23771897 -------------------CUGUGUACAUUGGCCAUAAAAUGACCCGAGGUUUCAAUUCAAAUGACAAGUCACUUACGUGGCGUUGCCUCUGCAAGCGCACAUUAGGCCUAAUUGGUCUU -------------------.(((((.((((........))))....(((((..(...((....))...(((((....))))))..))))).......)))))..(((((.....))))). ( -25.80) >DroSec_CAF1 68275 101 - 1 -------------------CCGUGUACAUUGGCCAUAAAAUGACCCGAGGUUUCAAUUCAAAUGACAAGUCACUUACGUGGCGUUGCCUCUGCAAGCGCACAUUAGGCCUAAUUGGUCUU -------------------..((((.((((........))))....(((((..(...((....))...(((((....))))))..))))).......))))...(((((.....))))). ( -25.50) >DroSim_CAF1 50316 101 - 1 -------------------CCGUGUACAUUGGCCAUAAAAUGACCCGAGGUUUCAAUUCAAAUGACAAGUCACUUACGUGGCGUUGCCUCUGCAAGCGCACAUUAGGCCUAAUUGGUCUU -------------------..((((.((((........))))....(((((..(...((....))...(((((....))))))..))))).......))))...(((((.....))))). ( -25.50) >DroEre_CAF1 66753 101 - 1 -------------------GCGUGUACAUGGGCCAUAAAAUGGCCCGAGGUUUCAAUUUAAAUGACAAGUCACUUACGUGGCGUUACCUCUAGAAGCGCACAUUAGGCCUAAUUGGUCUU -------------------((((......(((((((...)))))))(((((.(((.......)))...(((((....)))))...))))).....)))).....(((((.....))))). ( -35.30) >DroYak_CAF1 43860 120 - 1 UUUUUAUGGGCCUAAACACGUGUGUACAUUCGCCAUAAAAUGACCCGGGGUUUCAAUUUAAAUGACAAGUCACUUACGUGGCGUUGCCUGUAGAAGCACACAUUAGGCCUAAUUGGUCUU ......(((((((((....(((((((((..((((((....((((..(..((((......))))..)..)))).....)))))).....)))....)))))).)))))))))......... ( -32.90) >consensus ___________________CCGUGUACAUUGGCCAUAAAAUGACCCGAGGUUUCAAUUCAAAUGACAAGUCACUUACGUGGCGUUGCCUCUGCAAGCGCACAUUAGGCCUAAUUGGUCUU .....................((((.((((........))))....(((((..(...((....))...(((((....))))))..))))).......))))...(((((.....))))). (-23.08 = -22.76 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:57 2006