| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,309,001 – 22,309,103 |
| Length | 102 |
| Max. P | 0.532238 |
| Location | 22,309,001 – 22,309,103 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.18 |
| Mean single sequence MFE | -43.48 |
| Consensus MFE | -28.56 |
| Energy contribution | -32.96 |
| Covariance contribution | 4.40 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.66 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532238 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22309001 102 - 23771897 CUGUACCAAGCUCUAGGACCACCGCCCCCAACUUUCUUCAUUAGAGAACUCGGUGGAGCAUGG------------------UGGAGUUGCGUGCCUGCCUGCAGGAGCAGUCCUCAUAUG ....((((.((((((((....))...((....(((((.....)))))....)))))))).)))------------------)(((.((((...((((....)))).)))))))....... ( -31.70) >DroSec_CAF1 67667 111 - 1 CUGUACCAAGCUUCAGGGCCACCGCCCCCGACUUUCCUCAUUAGAGAGCUCGGUGGAGCUUGGUGGAUC---------UGGUGGAGUUGCGUGCCUGCCUGUAGGAGCAGUCCUCAUAUG .(.((((((((((((((((....))))(((((((((.......))))).)))))))))))))))).)..---------(((.(((.((((...((((....)))).)))))))))).... ( -47.00) >DroSim_CAF1 49709 111 - 1 CUGUACCAAGCUCCAGGGCCACCGCCCCCGACUUUCCUCAUUAGAGAGCUCGGUGGAGCUUGGUGGAUC---------UGGUGGAGUUGCGUGCCUGCCUGCAGGAGCAGUCCUCAUAUG .(.((((((((((((((((....))))(((((((((.......))))).)))))))))))))))).)..---------(((.(((.((((...((((....)))).)))))))))).... ( -51.90) >DroEre_CAF1 66145 120 - 1 CUGUACCAAGCUCCAGGACCACCGCCCCCGACUUUCCUCAUUAGGGAGCUCGGUGGAGCUUGGUGGAGCUGGUGGAGCUGGUGGAGUUGCGUGCCUGCCUGCAGGAGCAGUCCUCGUAUG ....((((.((((((((.(((((((((((((.((((((....)))))).)))).)).))..)))))..))..))))))))))(((.((((...((((....)))).)))))))....... ( -54.10) >DroYak_CAF1 43329 88 - 1 CUGUACGAAGCUCCAGGGCCACCGCACCCGGCAUUCCUCAUUAGGG--------------------------------UGGUGGACUUGCGUGCCUGCCAGCAGGAGCAGUUCUCGUAUG ..((((((((((.((((.(((((((.((..(.........)..)))--------------------------------)))))).)))).((.((((....)))).)))))).)))))). ( -32.70) >consensus CUGUACCAAGCUCCAGGGCCACCGCCCCCGACUUUCCUCAUUAGAGAGCUCGGUGGAGCUUGGUGGA_C_________UGGUGGAGUUGCGUGCCUGCCUGCAGGAGCAGUCCUCAUAUG ...((((((((((((((((....))))(((((((((.......))))).)))))))))))))))).................(((.((((...((((....)))).)))))))....... (-28.56 = -32.96 + 4.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:55 2006