Locus 8520

Sequence ID 3L_DroMel_CAF1
Location 22,308,378 – 22,308,498
Length 120
Max. P 0.697306
window13952

overview

Window 2

Location 22,308,378 – 22,308,498
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.08
Mean single sequence MFE -30.42
Consensus MFE -25.92
Energy contribution -26.60
Covariance contribution 0.68
Combinations/Pair 1.06
Mean z-score -1.36
Structure conservation index 0.85
SVM decision value 0.34
SVM RNA-class probability 0.697306
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22308378 120 + 23771897
AGGCAGCCAACGUAGCAGAUGCUGUUGUCAAGUAUUUAUGCUAAGAACUGUCAAACAAGUUGUAGUUACAUUGAUUACAUGCCCCAACUGCUGGCAUCUAUAUAUGGCAUCCAUCCUUCU
.((..((((..(((..(((((((((.((((((((.....((((..((((........)))).))))))).))))).))..((.......)).))))))).))).))))..))........ ( -28.00)
>DroSec_CAF1 67027 120 + 1
AGGCAGCCAACGAAGCAGAUGCUGUUGUCAAGCAUUUAUGCUAAGAGCUGUCAAACAAGUUGUAGUUACAUUGAUUACAUGCCCCAACUACUGGCAUCUCUAUAUGGCAACCCUCCUUCC
.((..((((....((((((((((.......))))))..)))).((((.(((((....(((((..((..............))..)))))..))))).))))...))))..))........ ( -31.34)
>DroSim_CAF1 49069 120 + 1
AGGCAGCCAACGAAGCAGAUGCUGUUGUCAAGUAUUUAUGCUAAGAGCUGUCAAACAAGUUGUAGUUACAUUGAUUACAUGCCCCAACUGCUGGCAUCUCUAUAUGGCAACCCUCCUUCC
.((..((((....((((((((((.......))))))..)))).((((.(((((....(((((..((..............))..)))))..))))).))))...))))..))........ ( -30.44)
>DroEre_CAF1 65512 120 + 1
AGGCAGCCAACCAAGCAGAUGCCGUUGUCAAGUAUUUAUGCUAAGAGCUGUCAAACAAGUUGUAGUUACAUUGAUUACAUGCCCCAACUGCUGGCAUCUCUAUAUGGCAUCCCUCCUUCC
(((..((((....((.(((((((((.((((((((.....((((..((((........)))).))))))).))))).))..((.......)).)))))))))...))))...)))...... ( -29.80)
>DroYak_CAF1 42711 120 + 1
AGGCAGCCAAUGAAGCGGAUGCCGUUGUCAAGUAUUUAUGCUAAGAGCUGUCAAACAAGUUGUAGUUACAUUGAUUACACGCCCCAACUGCUAGCAUCUCUAUAUGGCAUCCUUGCCUCC
(((((((.......))(((((((((.....((((....)))).((((.(((......(((((..((..............))..)))))....))).))))..))))))))).))))).. ( -32.54)
>consensus
AGGCAGCCAACGAAGCAGAUGCUGUUGUCAAGUAUUUAUGCUAAGAGCUGUCAAACAAGUUGUAGUUACAUUGAUUACAUGCCCCAACUGCUGGCAUCUCUAUAUGGCAUCCCUCCUUCC
.((..((((....((((((((((.......))))))..)))).((((.(((((....(((((..((..............))..)))))..))))).))))...))))..))........ (-25.92 = -26.60 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:50 2006