| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,577,450 – 2,577,564 |
| Length | 114 |
| Max. P | 0.652709 |
| Location | 2,577,450 – 2,577,564 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.88 |
| Mean single sequence MFE | -44.67 |
| Consensus MFE | -26.72 |
| Energy contribution | -27.67 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.652709 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2577450 114 - 23771897 GUGACUGGUCGCUCGCCCAGCAGCUGGUUGACGUUGUAGUAAGGCUGCUGGUGGGACCUUGGAAUGUCAUAGCUUUCCUCGAUGAAAGCGGAGUGCGCGUUGCGGCGGGCCACA (((.((.(((((((.((((((((((.....((......))..))))))))).).))......((((((((.((((((......))))))...))).)))))))))).)).))). ( -46.30) >DroVir_CAF1 5152 114 - 1 GUAACCGGUCGCUCGCCCAGCAAUUGGCCCACGUUGCAAUAGGGCAACUGAUGCGAACGUGGAAUGUCAUAGCUCUCUUCGAUCAACGAGGAAUUGGCAUGCCGUGACGCCACA .......(((((..((...))....(((((((((((((...((....))..))).))))))).((((((......((((((.....))))))..))))))))))))))...... ( -38.70) >DroPse_CAF1 4961 114 - 1 GUGACCGGUCGCUCGCCCAGCAGCUGGCUGACAUUGUAGUAGGGCAGCUGAUGGGAGCGUGGAAUGUCGUAGCUCUCCUCAAUAAACCCGGAGCUUGCAUUCCGACGGGCCACA (((.((.((((((..((((.((((((.((.((......)).)).)))))).)))))))..(((((((...((((((.............)))))).)))))))))).)).))). ( -52.72) >DroWil_CAF1 4844 114 - 1 GUCAUGGGUCGCUCGCCAAGCAAUUGAUUAACAUUGUAAUACGGCAAUUGAUGCGAACGUGGAAUGUCAUAGCUCUCUUCGAUCAACGAGGAAUUGGCAUGACGACGUGCCACA ......(.((((((..(((....)))......(((((......))))).)).)))).)((((..((((((.(((.((((((.....))))))...))))))))).....)))). ( -30.30) >DroAna_CAF1 3791 114 - 1 GUGACCGGCCGCUCGCUCAGGAGCUGGUUCAUGUUGUAGUAGGGCAGCUGGUGAGAGCGUGGAAUGUCGUAGCUCUCCUCGAUGAAGGCGGAGUUGGCAUUUCGAGCGGCCACG ......((((((((.((((..(((((.(..((......))..).)))))..)))).....(((((((((..((((((((......))).))))))))))))))))))))))... ( -50.90) >DroPer_CAF1 3683 114 - 1 GUAACCGGUCGCUCGCCCAGCAGCUGGCUGACAUUGUAGUAGGGCAGCUGAUGGGAGCGUGGAAUGUCGUAGCUCUCCUCAAUAAACCCGGAGCUUGCAUUCCGACGGGCCACA ((..((.((((((..((((.((((((.((.((......)).)).)))))).)))))))..(((((((...((((((.............)))))).)))))))))).))..)). ( -49.12) >consensus GUGACCGGUCGCUCGCCCAGCAGCUGGCUGACAUUGUAGUAGGGCAGCUGAUGGGAGCGUGGAAUGUCAUAGCUCUCCUCGAUAAACGCGGAGUUGGCAUUCCGACGGGCCACA ......((((..((.((((.((((((.((.((......)).)).)))))).)))).....(((((((...((((((.............)))))).)))))))))..))))... (-26.72 = -27.67 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:45 2006