Locus 8513

Sequence ID 3L_DroMel_CAF1
Location 22,303,146 – 22,303,249
Length 103
Max. P 0.535040
window13936

overview

Window 6

Location 22,303,146 – 22,303,249
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.00
Mean single sequence MFE -28.16
Consensus MFE -18.70
Energy contribution -18.74
Covariance contribution 0.04
Combinations/Pair 1.16
Mean z-score -1.75
Structure conservation index 0.66
SVM decision value 0.00
SVM RNA-class probability 0.535040
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22303146 103 - 23771897
-CCCCUUAAAAUAAACAGC--------------CUUUUGUUGCCAUAUUUUCUAUGAGUCGCAUGUCUGCGAAUAACUUAAAAUGUGUGCCACAUGCGUUUGUUGCAGUUUGGUUU--GU
-..((..(.(((((((.((--------------....(((.((((((((((.......(((((....))))).......)))))))).)).))).)))))))))....)..))...--.. ( -23.64)
>DroSec_CAF1 61767 115 - 1
UCCCCUUAAAAACAACAGCCAUGGCA---ACUCCUUUUGUUGCCAUAUUUUCUAUGAGUCGCAUGUCUGCGAAUAACUUAAAAUGUGUGCCACAUGUGUUUGUUGCAGUUCGGUUU--GU
...........((((..(((..((((---((.......))))))(((((((.......(((((....))))).......))))))).(((.(((......))).)))....)))))--)) ( -27.14)
>DroSim_CAF1 43827 115 - 1
UCCCCUUAAAAACAACAGCCAUGGCA---ACUCCUUUUGUUGCCAUAUUUUCUAUGAGUCGCAUGUCUGCGAAUAACUUAAAAUGUGUGCCACAUGCGUUUGUUGCAGUUCGGCUU--GU
..............((((((((((((---((.......)))))))).......(..((.(((((((..(((....((.......)).))).)))))))))..)........))).)--)) ( -30.70)
>DroEre_CAF1 60241 116 - 1
GCGCUUUUAAAAUAACAGCAAUAGCA---ACAUCUUUUGUUGUCAUAUUUUGUGUGAGUCGCAUGUCUGCGAAUAACUUAAAAUGUGUGCCACAAGCGUUUGUUGCAGCUUGGUUUU-GU
(((((.(((...))).)))....(((---(((.(.(((((.(((((((((((.((...(((((....)))))...)).))))))))).)).))))).)..)))))).))........-.. ( -32.30)
>DroYak_CAF1 37448 120 - 1
UCCCUUUAGAAACAAUUGCUGUUGCUGUCAUUUCUUUUGUUGCCAUAUUUUCUAUGAGUCGCAUGUCUGCGAAUAACUUAAAAUGUGUGCCACAAGCGUUUGUUGCAGUUUGGUUUUUUU
.......((((((....(((((.((........(.(((((.((((((((((.......(((((....))))).......)))))))).)).))))).)...)).)))))...)))))).. ( -27.04)
>consensus
UCCCCUUAAAAACAACAGCCAUGGCA___ACUCCUUUUGUUGCCAUAUUUUCUAUGAGUCGCAUGUCUGCGAAUAACUUAAAAUGUGUGCCACAUGCGUUUGUUGCAGUUUGGUUU__GU
................((((.................(((.((((((((((.......(((((....))))).......)))))))).)).))).(((.....))).....))))..... (-18.70 = -18.74 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:35 2006