Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,302,354 – 22,302,459 |
Length | 105 |
Max. P | 0.713575 |
Location | 22,302,354 – 22,302,459 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.62 |
Mean single sequence MFE | -20.99 |
Consensus MFE | -15.36 |
Energy contribution | -15.40 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.07 |
Mean z-score | -1.87 |
Structure conservation index | 0.73 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.713575 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22302354 105 - 23771897 UCG-------CGUGCUGGCUCAUUAAUAUUUAGCCGGCUCAGCUCCGACAUAAUUAAAACUGACUUUUUCCUAACCACCUCUUCCCAGUUCCCCUGUUC--------UCCUGCUCCGCCU ..(-------((.(((((((.(.......).)))))))..(((...((((.......(((((.......................)))))....)))).--------....))).))).. ( -17.20) >DroSec_CAF1 60979 105 - 1 UCG-------CGUGCUGGCUCAUUAAUAUUUAGCCGGCACAGCUCCGACAUAAUUAAAACUGACUUUUUCCUAACCACCUCUUCGCAGUUCCCCAGUUC--------UCCUGCUCCGCCU ..(-------((((((((((.(.......).)))))))))............................................((((...........--------..))))...)).. ( -20.72) >DroSim_CAF1 43044 105 - 1 UCG-------CGUGCUGGCUCAUUAAUAUUUAGCCGGCACAGCUCCGACAUAAUUAAAACUGACUUUUUCCUAACCACCUCUUCGCAGUUCCCCAGCUC--------UCCUGCUCCGCCU ..(-------((((((((((.(.......).)))))))))............................................((((...........--------..))))...)).. ( -20.72) >DroEre_CAF1 59414 120 - 1 UCGCGUGCUCCGUGCUGGCUCAUUAAUAUUUAGCCGGCACAGCUCCGACAUAAUUAAAACUGACUUUUUCCUAACCACCUCCUCCCAGUUCCCCUGGUCCCCUGUUGCCCUGCUCCGCCU ..(((......(((((((((.(.......).)))))))))(((..(((((...........((.....))..............((((.....)))).....)))))....))).))).. ( -26.00) >DroYak_CAF1 36658 104 - 1 UCGCGUGCUCCGUGCUGGCUCAUUAAUAUUUAGCCGGCAUAGCUCCGACAUAAUUAAAACUGACUUUUUCCUAACCACUUCUUCCCAGUUCCC----------------CUGCUCCGCCU (((.(.(((..(((((((((.(.......).)))))))))))).)))).........(((((.......................)))))...----------------........... ( -20.30) >consensus UCG_______CGUGCUGGCUCAUUAAUAUUUAGCCGGCACAGCUCCGACAUAAUUAAAACUGACUUUUUCCUAACCACCUCUUCCCAGUUCCCCAGUUC________UCCUGCUCCGCCU ...........(((((((((.(.......).))))))))).................(((((.......................))))).............................. (-15.36 = -15.40 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:34 2006