Locus 8509

Sequence ID 3L_DroMel_CAF1
Location 22,300,072 – 22,300,192
Length 120
Max. P 0.686211
window13927

overview

Window 7

Location 22,300,072 – 22,300,192
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.67
Mean single sequence MFE -30.90
Consensus MFE -25.00
Energy contribution -26.84
Covariance contribution 1.84
Combinations/Pair 1.06
Mean z-score -1.49
Structure conservation index 0.81
SVM decision value 0.32
SVM RNA-class probability 0.686211
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22300072 120 - 23771897
CGUGAGGUCGUGUAUACUGGGGAAAAGAGAUGUUUGCACAUUUUCCCAAAACACGCUUUUUAAAUUGUCCGGCCAACAUAUUUGAACUGCGGUUUAAUUAGUUAGUUGGCCAACAAACAA
.((((((.(((((......(((((((....((....))..)))))))...))))))))).....((((..(((((((.((.((((((....)))))).))....))))))).)))))).. ( -34.20)
>DroSec_CAF1 58624 120 - 1
CGUGAGGUCGUGUAUACUGGGGAAAGGAGAUGUUUGCACAUUUUCCCAAAACACGCUUUUUAAAUUGCCCGGCCAACAUAUUUGAACUGCGGUUUAAUUAGUUAGUUGGCCAACAAACAA
.((((((.(((((....((((((((...(.((....))).))))))))..)))))))))...........(((((((.((.((((((....)))))).))....))))))).))...... ( -33.00)
>DroSim_CAF1 40698 120 - 1
CGUGAGGUCGUGAAUACUGGGGAAAGGAGAUGUUUGCACAUUUUCCCAAAACACGCUUUUUAAAUUGCCCGGCCAACAUAUUUGAACUGCGGUUUAAUUAGUUAGUUGGCCAACAAACAA
.((((((.((((.....((((((((...(.((....))).))))))))...))))))))...........(((((((.((.((((((....)))))).))....))))))).))...... ( -31.20)
>DroEre_CAF1 57180 120 - 1
CGUGAGGUCGUGUAUACUGGGCCAAAGAGAUGUAUGCACAUUUUCCCAAAACGCGCUUUUUAAAUUGCCCGGCCAAAAUAUUUGAACUGCGGUUUAAUUAGUUAGUUGGCCAACAAACAG
.((((((.(((((....((((.....(((((((....)))))))))))..)))))))))...........((((((..((.((((((....)))))).)).....)))))).))...... ( -29.80)
>DroYak_CAF1 23444 112 - 1
-GUUAGGUCGAGUAUACAGGGCCAA----AUGUUUGCACAUUUUCCCAAAACGCGCUUUUUAAAUUGCCCGGC---AAUAUUUGAACUGCGGUUUAAUUAGUUAUUUAGCCAAUAAACAA
-....(((..((((.((.(((..((----((((....)))))).))).((((.(((..((((((((((...))---)..)))))))..))))))).....))))))..)))......... ( -26.30)
>consensus
CGUGAGGUCGUGUAUACUGGGGAAAAGAGAUGUUUGCACAUUUUCCCAAAACACGCUUUUUAAAUUGCCCGGCCAACAUAUUUGAACUGCGGUUUAAUUAGUUAGUUGGCCAACAAACAA
...((((.(((((....((((.....(((((((....)))))))))))..)))))))))...........(((((((.((.((((((....)))))).))....)))))))......... (-25.00 = -26.84 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:26 2006