Locus 8507

Sequence ID 3L_DroMel_CAF1
Location 22,298,470 – 22,298,587
Length 117
Max. P 0.894239
window13924

overview

Window 4

Location 22,298,470 – 22,298,587
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.62
Mean single sequence MFE -33.06
Consensus MFE -26.08
Energy contribution -27.20
Covariance contribution 1.12
Combinations/Pair 1.10
Mean z-score -1.94
Structure conservation index 0.79
SVM decision value 0.98
SVM RNA-class probability 0.894239
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22298470 117 - 23771897
ACG-GUGAACGGAAGCCGGGGAACGUAAAACGUUUUCCGGUUACUUACGAAAAUUAUAGGUUACAUAAAAAGCCAGCACAACUGAAGACGCCUCCAGGAAAACCCUAUACGGUAAGGG--
..(-(((..(((.((((((..((((.....))))..))))))................((((........)))).......)))....))))..........((((........))))-- ( -31.40)
>DroSec_CAF1 57053 119 - 1
UCG-GUCAACGGAAGCCGGGGAACGUAAAACGUUUUCCGGUUACUUACGAAAAUUAUAGGUUACAUAAAAAGCCAGCAGAACCGAAGACGCCUCCAGGAAAACCCUAUACGGGAUGGGGA
...-(((..(((.((((((..((((.....))))..))))))................((((........)))).......)))..)))..(((((......(((.....))).))))). ( -38.10)
>DroSim_CAF1 39122 119 - 1
UCG-GUCAACGGAAGCCGGGGAACGUAAAACGUUUUCCGGUUACUUACGAAAAUUAUAGGUUACAUAAAAAGCCAGCAGAACCGAAGACGCCUCCAGGAAAACCCUAUACGGGAUGGGGA
...-(((..(((.((((((..((((.....))))..))))))................((((........)))).......)))..)))..(((((......(((.....))).))))). ( -38.10)
>DroEre_CAF1 55622 119 - 1
UCGGGUCAAUGGAAGCGGGGGAACUUAAAACGUUUUCCGGUUACUUACGAAAAUUAUAGGUUACAUAAAAACCCAGCAGAACCGAAGACGCCUCCAGGAAAACCCCAUAGGGGAAGGGA-
..(((((..(((.(((.((..(((.......)))..)).)))................((((.......))))........)))..))).))(((.......((((...))))...)))- ( -27.10)
>DroYak_CAF1 21841 119 - 1
UCGGGUCAACGGAAGCCGAGGAGCGUAAAACGUUUUCCGGUUACUUAUGAAAAUUAUAGGUUACAUAAAAACCCAUCAGAACCGAAGACGCCUCCAGGAAAACCCUAUAAAGGAAGGAC-
..(((((..(((.(((((..(((((.....)))))..)))))((((((((...))))))))....................)))..))).))((((((.....))).....))).....- ( -30.60)
>consensus
UCG_GUCAACGGAAGCCGGGGAACGUAAAACGUUUUCCGGUUACUUACGAAAAUUAUAGGUUACAUAAAAAGCCAGCAGAACCGAAGACGCCUCCAGGAAAACCCUAUACGGGAAGGGG_
....(((..(((.((((((((((((.....))))))))))))................((((........)))).......)))..))).((((((((.....))).....))).))... (-26.08 = -27.20 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:23 2006