Locus 8505

Sequence ID 3L_DroMel_CAF1
Location 22,297,063 – 22,297,177
Length 114
Max. P 0.787918
window13921

overview

Window 1

Location 22,297,063 – 22,297,177
Length 114
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.35
Mean single sequence MFE -31.63
Consensus MFE -20.36
Energy contribution -20.93
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -2.38
Structure conservation index 0.64
SVM decision value 0.58
SVM RNA-class probability 0.787918
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22297063 114 + 23771897
GCAAUCGAAGAGCAUGAAAAAUGCAUGACAAGGAAACUCAAAACUCAAACACCGCUUCGCACGUGUGGAAGCGGGAAACCGCAGAGGAAGUUUUCUUGUGGACGUGAU------GAGGAU
...((((....((((.....)))).(.(((((((((((.....(((.....((((.........))))..((((....)))).)))..))))))))))).)...))))------...... ( -36.50)
>DroSec_CAF1 55646 110 + 1
GCAAUCGAAGAGCAUGAAAAAUGCAUGACAAGGAAACUCAAAACUCAAACACC----CACACGUGC-GAAGCGGGAAACCGCAGAGGAAGGUUGCUUGUGGACGGGAU-----UGGAGAU
.(((((.....((((.....)))).(.(((((..((((.....(((...(((.----.....))).-...((((....)))).)))...)))).))))).)....)))-----))..... ( -31.70)
>DroEre_CAF1 54319 115 + 1
GCAAUCGAAGAGCAUGAAAAAUGCAUGACAAGGAAACUCAAAACUCAAACACC----CACACGUGC-GAAGCGGGAAACCGCAGAGGAAGGUUGGUGGAGGACAGGAUGGGGUUGAGUAU
...........((((.....))))......((....))....((((((...((----((..(....-...((((....))))........(((.......))).)..)))).)))))).. ( -31.60)
>DroYak_CAF1 20485 109 + 1
GCAAUCGAAGAGCAUGAAAAAUGCAUGACAAGGAAACUCAAAACUCAUACACC----CACACGAGC-GAAGUGGGAAACCGCAGAGGAAGGUUGGUUGAGGACG------GAUUGAGGAU
.(((((.....((((.....))))......((....)).....((((..((.(----(...(....-)..((((....)))).......)).))..))))....------)))))..... ( -26.70)
>consensus
GCAAUCGAAGAGCAUGAAAAAUGCAUGACAAGGAAACUCAAAACUCAAACACC____CACACGUGC_GAAGCGGGAAACCGCAGAGGAAGGUUGCUUGAGGACGGGAU_____UGAGGAU
.(((((.....((((.....))))......((....)).....(((...(((..........))).....((((....)))).)))...))))).......................... (-20.36 = -20.93 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:20 2006