Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,293,998 – 22,294,117 |
Length | 119 |
Max. P | 0.568131 |
Location | 22,293,998 – 22,294,117 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.71 |
Mean single sequence MFE | -30.98 |
Consensus MFE | -23.86 |
Energy contribution | -27.55 |
Covariance contribution | 3.69 |
Combinations/Pair | 1.15 |
Mean z-score | -1.51 |
Structure conservation index | 0.77 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568131 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22293998 119 + 23771897 UCAAUUCAGUAGCCAGCUGGG-GGAAUCUAGUUCAACGAUAUGCUUCGAGUGAUUGAAGUGUAUCUUAAAGAUAUUCUAUCUUUAUGCCAUGUUCUUGGCUUUCAUGCAUACCGAUUAUU .....((.(((((.(((((((-....)))))))....((((((((((((....)))))))))))).((((((((...)))))))).((((......))))......)).))).))..... ( -32.70) >DroSec_CAF1 52504 119 + 1 UCAAUUCGGUAGCCAGCUGGGGGGAAUAUAGUUCAGCGAUACGCUUCGAGUGAUUGACGUGUAUCUUA-AGAUAUUCUAUCUUUGUGCCUUGUUCUUGGCUUCCAUGCAUCCCGAUUAUU .......((.((((((..(.((((.(((.........(((((((.((((....)))).)))))))..(-(((((...))))))))).)))).)..)))))).))................ ( -32.20) >DroEre_CAF1 51253 120 + 1 UCCAUUUGGUAGCCAGCUGGGGGGAAUGUAGUUCAACGAUACGCUUCGAGUGAUUGAAGUGCGUCUUAAAAAUAUUCUAUCUAUAUUCCAUGUUCUUGGCUUUCAUGCAUCCCGAUUAUU ......(((.((((((..(.(.(((((((((......((..((((((((....))))))))..))...............))))))))).).)..)))))).)))............... ( -31.20) >DroYak_CAF1 17180 119 + 1 UCAAUUCGGUAGCCAGCUGGG-GGAAUCUAGUUCAACGAUUCGCUUCGAGUAAUUGAAGUGUAUCCUAAAGAUAUUCUUUCUAUAUUCAAUGUUCUUGGCUUUCAUGCAUCCCGAUUAUU .....((((..((.(((..((-(((((.(((......(((.((((((((....)))))))).)))..((((.....))))))).)))).....)))..))).....))...))))..... ( -27.80) >consensus UCAAUUCGGUAGCCAGCUGGG_GGAAUCUAGUUCAACGAUACGCUUCGAGUGAUUGAAGUGUAUCUUAAAGAUAUUCUAUCUAUAUGCCAUGUUCUUGGCUUUCAUGCAUCCCGAUUAUU .......((.((((((..(.(.(((((((((......((((((((((((....))))))))))))....((.....))..))))))))).).)..)))))).))................ (-23.86 = -27.55 + 3.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:15 2006