Locus 8501

Sequence ID 3L_DroMel_CAF1
Location 22,293,536 – 22,293,656
Length 120
Max. P 0.885654
window13915

overview

Window 5

Location 22,293,536 – 22,293,656
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.92
Mean single sequence MFE -28.59
Consensus MFE -21.76
Energy contribution -22.64
Covariance contribution 0.87
Combinations/Pair 1.07
Mean z-score -2.24
Structure conservation index 0.76
SVM decision value 0.94
SVM RNA-class probability 0.885654
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22293536 120 - 23771897
CCUUUGCAAUGUACAGUGAACAAUAAAAAUUAACUGGAGCAUCAAUAACAAUGCAAAAGCCAUAAAAUUGGUGCUAACAAUGUAGAGCAUCGCGGUGGCGCCCAGCCAUUCUAUUCCGCA
.(((((((.(((.((((...............)))).(((((((((......((....))......))))))))).))).)))))))....((((((((.....)))).......)))). ( -33.97)
>DroSec_CAF1 52045 120 - 1
CCUUUGCCAUGUGCAGUGAACAAUAAAAAUUAACUGGAGCAUCAAUAACAAUGCAAAAGCCAUAAAAUUGGUGCUAACAAUGUAGAGCAUCGCGGUGGCGCCCAGCCAUUCUAUUCCGCA
.((((((..(((.((((...............)))).(((((((((......((....))......))))))))).)))..))))))....((((((((.....)))).......)))). ( -30.57)
>DroEre_CAF1 50789 113 - 1
CCUUUGCCAUGUGCAGUGAACAAUAAAAAUUAACUGGAGCAUCAAUAACAAUGCAAAAGCCAUAAAAUUGGUGCUAACAA-------CAUCGCGGUGGCGCCCAGCCAUUCUAUUCCGCA
........((((.((((...............)))).(((((((((......((....))......)))))))))....)-------))).((((((((.....)))).......)))). ( -26.07)
>DroYak_CAF1 16737 101 - 1
CCUUUGCCGUAUGCAGUGAACAAUAAAAAUUAACUGGAGCAUCAAUAACAAUGCAAAAGCCAUAAAAUUGGUGCUAACAA-------CAUCGCGGUGGCGCCCAGCU------------A
.....((((((((((((...............)))).(((((((((......((....))......))))))))).....-------))).)))))(((.....)))------------. ( -23.76)
>consensus
CCUUUGCCAUGUGCAGUGAACAAUAAAAAUUAACUGGAGCAUCAAUAACAAUGCAAAAGCCAUAAAAUUGGUGCUAACAA_______CAUCGCGGUGGCGCCCAGCCAUUCUAUUCCGCA
....(((.((((.((((...............)))).(((((((((......((....))......)))))))))...........)))).)))(((((.....)))))........... (-21.76 = -22.64 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:14 2006