Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,292,297 – 22,292,533 |
Length | 236 |
Max. P | 0.989789 |
Location | 22,292,297 – 22,292,417 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.49 |
Mean single sequence MFE | -26.10 |
Consensus MFE | -23.24 |
Energy contribution | -23.30 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.08 |
Mean z-score | -1.49 |
Structure conservation index | 0.89 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.689520 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22292297 120 - 23771897 AAGUCGUAAACAUUAUUUCUAAAAAUUGCUUUUGUCGCAUUUCCUCGACAUAUUUGGCAGCAGUUCAAGACGCCAGAGCUGCUCUGGCGAACAAUUCCCACCACUUAGGAGGACAUAAAC ..((((....)....(((((((...(((((..(((((........))))).....)))))..........((((((((...))))))))...............))))))))))...... ( -28.50) >DroSec_CAF1 50767 120 - 1 AAGUCGUAAACAUUAUUCCUAAAAAUUGCUUUUGUCGCAUUUCCUCGACAUAUUUGGCAGGAGUUCAAGACGCCAGAGCUGCUCUGGCCAACAAUUCCCACCACUUAGGAGAACAUAAAC ...............(((((((....((((..(((((........))))).....))))((((((......(((((((...)))))))....))))))......)))))))......... ( -30.50) >DroEre_CAF1 49126 117 - 1 GAGUCGUAAACAUUAUUUCUAAAAAUAGCUUUUGUCGCAUUUUCUCGACACAAUUGGCAGCAGCUCAAGACGCCAGAG---CUCUGGCCAACAAUGCCCACCACUUAGAAGAACAUAAAC ...............(((((((..........(((((........)))))...(((((((.(((((.........)))---)))).))))).............)))))))......... ( -22.90) >DroYak_CAF1 15160 117 - 1 GAGUCGUAAACAUUAUUUCUAAAAAUUGCUUUUGUCGCAUUUUCUCGACACAUUUGGCAGCAGUUCAAGACGCCAGAA---CUCUGGCCAACAAUUCUUACCACUUAGAAGAACAUAAAC .........................(((((..(((((........))))).....)))))..((((.....(((((..---..)))))......((((........))))))))...... ( -22.50) >consensus AAGUCGUAAACAUUAUUUCUAAAAAUUGCUUUUGUCGCAUUUCCUCGACACAUUUGGCAGCAGUUCAAGACGCCAGAG___CUCUGGCCAACAAUUCCCACCACUUAGAAGAACAUAAAC ...............(((((((...(((((..(((((........))))).....)))))...........(((((((...)))))))................)))))))......... (-23.24 = -23.30 + 0.06)
Location | 22,292,377 – 22,292,493 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.19 |
Mean single sequence MFE | -36.87 |
Consensus MFE | -33.78 |
Energy contribution | -33.65 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.11 |
Mean z-score | -2.42 |
Structure conservation index | 0.92 |
SVM decision value | 2.18 |
SVM RNA-class probability | 0.989789 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22292377 116 - 23771897 UGCAGCCAAAUCCGUUUUCGAUGGCUGCGCCUAAAGUGCGGCAAGGGCAGCCAA----GGGAGGUAGACAACAGACAGCAAAGUCGUAAACAUUAUUUCUAAAAAUUGCUUUUGUCGCAU .(((((((....((....)).))))))).......(((((((((((((((....----.((((((((......(((......))).......)))))))).....))))))))))))))) ( -41.72) >DroSec_CAF1 50847 120 - 1 GGCAGCCAAAUCCGUUUUCGAUGGCUGCGCCUAAAGUGCGGCAAGGGUCACCAAAGGGGGGAGGUAGAAAACAGACAGCAAAGUCGUAAACAUUAUUCCUAAAAAUUGCUUUUGUCGCAU .(((((((....((....)).))))))).......(((((((((((((..((....))(((((..........(((......)))..........))))).......))))))))))))) ( -38.25) >DroEre_CAF1 49203 110 - 1 GGCAGCCAAAUCCGUUUUCAAUGGCUGCGCCUAAAAUGCGGCAAUGGCCGCCAGA---GGGAGC-------CAGACAACAGAGUCGUAAACAUUAUUUCUAAAAAUAGCUUUUGUCGCAU .(((((((.............))))))).......(((((((((((((..((...---.)).))-------))(((......)))..........................))))))))) ( -32.62) >DroYak_CAF1 15237 117 - 1 GGCAGCCAAAUCCGUUUUCAAUGGCUGCGCCUAAAAUGCGGCAAUGGCCGCCACC---GGGAGGUAGAUAACAGACAACAGAGUCGUAAACAUUAUUUCUAAAAAUUGCUUUUGUCGCAU .(((((((.............))))))).......(((((((((.(((.......---.((((((((......(((......))).......)))))))).......))).))))))))) ( -34.90) >consensus GGCAGCCAAAUCCGUUUUCAAUGGCUGCGCCUAAAAUGCGGCAAGGGCCGCCAAA___GGGAGGUAGA_AACAGACAACAAAGUCGUAAACAUUAUUUCUAAAAAUUGCUUUUGUCGCAU .(((((((.............))))))).......(((((((((((((..........(((((..........(((......)))..........))))).......))))))))))))) (-33.78 = -33.65 + -0.13)
Location | 22,292,417 – 22,292,533 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.61 |
Mean single sequence MFE | -38.28 |
Consensus MFE | -29.90 |
Energy contribution | -31.02 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.07 |
Mean z-score | -2.01 |
Structure conservation index | 0.78 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.856106 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22292417 116 - 23771897 AUGCAAUUUUCAGUUUGUUUUGGCUUUCUGAAAAGGACUUUGCAGCCAAAUCCGUUUUCGAUGGCUGCGCCUAAAGUGCGGCAAGGGCAGCCAA----GGGAGGUAGACAACAGACAGCA ............(((((((...(((((((((((((((.((((....))))))).)))))..((((((((((........)))....))))))).----)))))))....))))))).... ( -37.20) >DroSec_CAF1 50887 120 - 1 AUGCAAUUUUCAGUUUGUUUUGGCUUUCUGAAAAGGACUUGGCAGCCAAAUCCGUUUUCGAUGGCUGCGCCUAAAGUGCGGCAAGGGUCACCAAAGGGGGGAGGUAGAAAACAGACAGCA ............(((((((((.(((((((((((((((.((((...)))).))).)))))(((.(((((((.....)))))))....))).((....)))))))))..))))))))).... ( -39.50) >DroEre_CAF1 49243 110 - 1 AUGCAAUUUUCAGUUUGUUUUGGCUUUCCGAACAGGACUUGGCAGCCAAAUCCGUUUUCAAUGGCUGCGCCUAAAAUGCGGCAAUGGCCGCCAGA---GGGAGC-------CAGACAACA ............(((.((((.((((((((.....)))....(((((((.............))))))).(((.....(((((....)))))...)---))))))-------)))))))). ( -37.22) >DroYak_CAF1 15277 117 - 1 AUGCAAUUUUCAGUUUGUUUUGGCUUUCUGAACAGGACUUGGCAGCCAAAUCCGUUUUCAAUGGCUGCGCCUAAAAUGCGGCAAUGGCCGCCACC---GGGAGGUAGAUAACAGACAACA ............(((((((...((((((((...(((.....(((((((.............))))))).))).....(((((....)))))...)---)))))))....))))))).... ( -39.22) >consensus AUGCAAUUUUCAGUUUGUUUUGGCUUUCUGAAAAGGACUUGGCAGCCAAAUCCGUUUUCAAUGGCUGCGCCUAAAAUGCGGCAAGGGCCGCCAAA___GGGAGGUAGA_AACAGACAACA ............(((((((...(((((((....(((.....(((((((.............))))))).))).....(((((....))))).......)))))))....))))))).... (-29.90 = -31.02 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:13 2006