| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,571,584 – 2,571,690 |
| Length | 106 |
| Max. P | 0.547746 |
| Location | 2,571,584 – 2,571,690 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 75.39 |
| Mean single sequence MFE | -25.99 |
| Consensus MFE | -17.95 |
| Energy contribution | -16.65 |
| Covariance contribution | -1.30 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.547746 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2571584 106 + 23771897 CUAAGCGAA-UCGUA--CUUCUUCCAUGUUUCAGGACAUCAUCCACGAUCCCGGCCGUGGCGCUCCUCUGGCCGUCGUCCACUUCCGCGACCCCUACCGCUACAAGAUC ...((((.(-((((.--.....(((........)))........)))))...(((((.((....))..)))))(((((........)))))......))))........ ( -23.34) >DroPse_CAF1 1211 97 + 1 ----------AUAUG--UCAUUUUGUGGUCUUAGGACAUCGUGCACGAUCCCGGUCGUGGCGCUCCCUUGGCUGUCGUUCAUUUCCGUGACCCCUACCGCUACAAGAUC ----------.....--..((((((((((..((((.....(((((((((....))))).))))..........((((..........)))).))))..)))))))))). ( -27.00) >DroGri_CAF1 180 108 + 1 CUAUGCUAA-CUGAUUUUGUUUUGUAUAUUUCAGGACAUCAUUCACGAUCCUGGUCGUGGUGCUCCUUUGGCCGUCGUUCACUUCCGCGAUCCCUAUCGCUACAAGAUC .........-..((((((((.............((((..(...((((((....))))))(.(((.....)))))..))))......(((((....))))).)))))))) ( -24.40) >DroEre_CAF1 350 103 + 1 CUAACCAAUGCUGU-----CC-UUCAUGUUGCAGGACAUCAUCCACGAUCCCGGCCGUGGCGCCCCUCUGGCCGUCGUCCACUUCCGCGACCCCUACCGCUACAAGAUC .......(((.(((-----((-(.(.....).)))))).)))....((((..(((.((((.(((.....))).(((((........)))))..)))).)))....)))) ( -26.30) >DroWil_CAF1 1862 101 + 1 CUAAUG----ACUU----AAUUGUUUUGGUUUAGGACAUCGUCCACGAUCCCGGUCGUGGUGCCCCCUUGGCUGUGGUUCACUUCCGUGAUCCCUACCGCUACAAGAUC ......----....----..((((..((((...((((((...(((((((....))))))).(((.....))).)))..((((....)))))))..))))..)))).... ( -27.20) >DroAna_CAF1 328 100 + 1 CUAAUA----CUAUU--AUUC-UUGAUA--UUAGGACAUCGUCCACGAUCCCGGCCGUGGCGCUCCUCUGGCCGUCGUCCACUUCCGCGAUCCCUACCGCUACAAGAUC ......----.....--..((-(((...--...((((((((....))))..((((((.((....))..))))))..))))......(((........)))..))))).. ( -27.70) >consensus CUAAGC____CUGU____UUCUUUCAUGUUUCAGGACAUCAUCCACGAUCCCGGCCGUGGCGCUCCUCUGGCCGUCGUCCACUUCCGCGACCCCUACCGCUACAAGAUC .................................(((((((......)))..((((((.((.....)).))))))..))))......(((........)))......... (-17.95 = -16.65 + -1.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:43 2006