Locus 85

Sequence ID 3L_DroMel_CAF1
Location 317,446 – 317,566
Length 120
Max. P 0.844876
window121

overview

Window 1

Location 317,446 – 317,566
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.11
Mean single sequence MFE -42.63
Consensus MFE -39.65
Energy contribution -40.10
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -2.10
Structure conservation index 0.93
SVM decision value 0.76
SVM RNA-class probability 0.844876
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 317446 120 + 23771897
ACUACUUCUCCAUUUCCAGAGGAUUACCUGUGACCAUUUUGAUUAGAUGGCUAUCUUCGGGGUCGGACUCGGGUCGGUGGCAUUGCUACCGGCCUUGUCAACAGCCUUAAGGUGCAGCUU
....(((((........))))).....((((..((((((.....))))))..(((((.(((((..(((..(((((((((((...))))))))))).)))....))))))))))))))... ( -40.50)
>DroSec_CAF1 441 120 + 1
ACUACAUCUCCACUUCCGGAGGAUUACCUGUAACCAUUUUGAUUAGAUGGCUAUCUUCGGGGUCGGACUUGGGUCGGUGGCAUUGCUACCGGCCUUGUCAACAGCCUUAAGGUGCAGCUU
......(((((......))))).....(((((.((((((.....))))))....(((..((((..(((..(((((((((((...))))))))))).)))....))))..))))))))... ( -44.70)
>DroSim_CAF1 441 120 + 1
ACUACUUCUCCACUUCCGGAGGAUUACCUGUGACCAUUUUGAUUAGAUGGCUAUCUUCGGGGUCGGAACCGGGUCGGUGGCAUUGCUACCGGCCUUGUCAACAGCCUUAAGGUGCAGCUU
.....((((((......))))))....((((..((((((.....))))))..(((((.(((((.(..((.(((((((((((...))))))))))).))...).))))))))))))))... ( -42.70)
>consensus
ACUACUUCUCCACUUCCGGAGGAUUACCUGUGACCAUUUUGAUUAGAUGGCUAUCUUCGGGGUCGGACUCGGGUCGGUGGCAUUGCUACCGGCCUUGUCAACAGCCUUAAGGUGCAGCUU
......(((((......))))).....(((((.((((((.....))))))....(((..((((..(((..(((((((((((...))))))))))).)))....))))..))))))))... (-39.65 = -40.10 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:58 2006