Locus 8499

Sequence ID 3L_DroMel_CAF1
Location 22,290,938 – 22,291,056
Length 118
Max. P 0.894288
window13911

overview

Window 1

Location 22,290,938 – 22,291,056
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.36
Mean single sequence MFE -34.57
Consensus MFE -27.54
Energy contribution -26.98
Covariance contribution -0.56
Combinations/Pair 1.23
Mean z-score -2.12
Structure conservation index 0.80
SVM decision value 0.98
SVM RNA-class probability 0.894288
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22290938 118 + 23771897
ACCGGAGGGGGAGAAAGUCCUUAAAGGAUUUCGCAGAGGUUCUUUAAUUUUAAGUUUCUCUUGCCA-AGAUGCUUUUCCAUUUCGCCCGCUUCAAGGACCCCCUUGAG-GACAUUGCUUU
......(((.((((((((((.....)))))).(((((((..(((.......)))..)))).)))..-.............)))).)))(((((((((....)))))))-).)........ ( -34.90)
>DroSec_CAF1 49363 119 + 1
AGCGGAGGGGGAGAAAGUCCUUAAAGGAUUUCGCAGAGGUUCUUUAAUU-UAAGUUUCUUCUGCCAAAGAUACUUUUCCAUUUCGCCCGCUUCAAGGACCCCCUUGAGGGACAUUCCUUU
...((((((.((((((((((.....)))))).(((((((..(((.....-.)))...)))))))................)))).))).((((((((....)))))))).....)))... ( -40.40)
>DroEre_CAF1 47773 118 + 1
CGCUGAAGGGGAGAGAGUCCUUAAAGGAUUUCGCAAAGGUUCUUUAAUUUUAAGUUUCUUCUGCCA-AGAUGCUUUUCCAUUUCGCUCGCUUCAAGGACCCCCUUGAG-GACGCUGCUUU
....((((((((((((((((.....)))))..(((((((..(((.......)))..)))).)))..-.....))))))).))))((.((((((((((....)))))))-).))..))... ( -35.40)
>DroYak_CAF1 13790 117 + 1
AGCUGA-GGGGAGAGAGUCCUUAAAGGAUUUCGCAAAGGUUCUUUAAUUUUAAGUUUCUUCUGCCA-AGAUUCUUUUUCAUUUAUUCCACUUCAAGGACCCCCUUGAA-AACAUUGCUUU
(((...-..((((.((((....(((((((((.(((((((..(((.......)))..)))).)))..-)))))))))...)))).))))..(((((((....)))))))-......))).. ( -27.60)
>consensus
AGCGGAGGGGGAGAAAGUCCUUAAAGGAUUUCGCAAAGGUUCUUUAAUUUUAAGUUUCUUCUGCCA_AGAUGCUUUUCCAUUUCGCCCGCUUCAAGGACCCCCUUGAG_GACAUUGCUUU
.((((((.((((((((((((.....)))))).(((((((..(((.......)))..)))).))).........)))))).))))))....(((((((....)))))))............ (-27.54 = -26.98 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:10 2006