Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,290,733 – 22,290,850 |
Length | 117 |
Max. P | 0.950506 |
Location | 22,290,733 – 22,290,850 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.97 |
Mean single sequence MFE | -29.05 |
Consensus MFE | -23.96 |
Energy contribution | -24.27 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.00 |
Mean z-score | -2.55 |
Structure conservation index | 0.82 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950506 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22290733 117 + 23771897 GCUUACAGAACUCCAUAUUGUGUGCAGGGCACAAAGGCAAAGUCGAUUUAGUUGGCCAAAUAAGCAAAAGCAGAAAGAAAAUUGAAGGCCAAAGGGAGAAUCGGGAGUGGG---AAAAGG .(((.....(((((...((((((.....)))))).........((((((..((((((......((....))...((.....))...)))))).....)))))))))))...---..))). ( -27.80) >DroSec_CAF1 49137 120 + 1 GCUUACAGAACUCCAUAUUGUGUGCAGGGCACAAAGGCAAAGUCGAUUUAGUUGGCCAAAUAAGCAAAGGCAGAAAGAAAAUUGAAGGCCAAAGGGAGAAUCGGGAGUGGGGGGUAAAGG (((..(...(((((...((((((.....)))))).(((....(((((((..((.(((...........)))...))..)))))))..))).............))))).)..)))..... ( -31.00) >DroEre_CAF1 47545 108 + 1 GCUUACAGAACUCCAUAUUGUG-------CACAAA-GCAAAGUCGAUUUAGUUGGCCAAAUAAGCAAAGGCAGAAAGAAAAUUGAAGGCCAAAG-GAGAAUCGGGAGUGGG---GAGAGG .(((.(...(((((......((-------(.....-)))....((((((..((((((......((....))...((.....))...))))))..-..)))))))))))...---).))). ( -26.80) >DroYak_CAF1 13568 116 + 1 GCUUACAAAACUCCAUAUUGUGUGCAGGGCACAAA-GCAAAGUCGAUUUAGUUGGCCAAAUAAGCAAAGGCCGAAAGAAAAUUGAAGGCCAAAGGGAGAAUCGGAAGUGGG---GAAAGG ..........((((((.((((((.....)))))).-......(((((((..((((((......((....))(....).........)))))).....)))))))..)))))---)..... ( -30.60) >consensus GCUUACAGAACUCCAUAUUGUGUGCAGGGCACAAA_GCAAAGUCGAUUUAGUUGGCCAAAUAAGCAAAGGCAGAAAGAAAAUUGAAGGCCAAAGGGAGAAUCGGGAGUGGG___GAAAGG .....(...(((((...((((((.....)))))).........((((((..((((((......((....))...((.....))...)))))).....))))))))))).).......... (-23.96 = -24.27 + 0.31)
Location | 22,290,733 – 22,290,850 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.97 |
Mean single sequence MFE | -21.40 |
Consensus MFE | -18.34 |
Energy contribution | -18.15 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -2.06 |
Structure conservation index | 0.86 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.920270 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22290733 117 - 23771897 CCUUUU---CCCACUCCCGAUUCUCCCUUUGGCCUUCAAUUUUCUUUCUGCUUUUGCUUAUUUGGCCAACUAAAUCGACUUUGCCUUUGUGCCCUGCACACAAUAUGGAGUUCUGUAAGC .(((..---...((((((((((......((((((...............((....))......))))))...)))))..........(((((...)))))......))))).....))). ( -21.80) >DroSec_CAF1 49137 120 - 1 CCUUUACCCCCCACUCCCGAUUCUCCCUUUGGCCUUCAAUUUUCUUUCUGCCUUUGCUUAUUUGGCCAACUAAAUCGACUUUGCCUUUGUGCCCUGCACACAAUAUGGAGUUCUGUAAGC ..(((((.....((((((((((......((((((.............................))))))...)))))..........(((((...)))))......)))))...))))). ( -21.85) >DroEre_CAF1 47545 108 - 1 CCUCUC---CCCACUCCCGAUUCUC-CUUUGGCCUUCAAUUUUCUUUCUGCCUUUGCUUAUUUGGCCAACUAAAUCGACUUUGC-UUUGUG-------CACAAUAUGGAGUUCUGUAAGC ......---...((((((((((...-..((((((.............................))))))...)))))....(((-.....)-------))......)))))......... ( -19.05) >DroYak_CAF1 13568 116 - 1 CCUUUC---CCCACUUCCGAUUCUCCCUUUGGCCUUCAAUUUUCUUUCGGCCUUUGCUUAUUUGGCCAACUAAAUCGACUUUGC-UUUGUGCCCUGCACACAAUAUGGAGUUUUGUAAGC ......---....(((.(((..((((..(((.................((((...........)))).................-..(((((...))))))))...))))..))).))). ( -22.90) >consensus CCUUUC___CCCACUCCCGAUUCUCCCUUUGGCCUUCAAUUUUCUUUCUGCCUUUGCUUAUUUGGCCAACUAAAUCGACUUUGC_UUUGUGCCCUGCACACAAUAUGGAGUUCUGUAAGC ............((((((((((......((((((.............................))))))...))))).........(((((.......)))))...)))))......... (-18.34 = -18.15 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:09 2006