| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,286,480 – 22,286,600 |
| Length | 120 |
| Max. P | 0.842339 |
| Location | 22,286,480 – 22,286,600 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.60 |
| Mean single sequence MFE | -24.50 |
| Consensus MFE | -19.76 |
| Energy contribution | -20.08 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.842339 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22286480 120 + 23771897 GAGGCGGAGAUCCUUCACUCGACCACUACACAGCUGCACUUAAUUUAGCCUUAAUUAAUUGACCUGCAGUAGAGUCGAGUAUUUCCUUCUUUCCGUUCCAACCCACUCAACCCAAUCCUC (..(((((((....))(((((((..((((.(((...((.((((((.......)))))).))..)))..)))).)))))))...........)))))..)..................... ( -28.00) >DroSec_CAF1 44924 114 + 1 ------GAGAUCCUUCACUCGACCACUACACAGCUGCACUUAAUUUAGCCUUAAUUAAUUGACCUGCAGUAGAGUCGAGUAUUUCCUUCUUUCCGUUCCAACCCACUCAAACCAAUCCUC ------(((.......(((((((..((((.(((...((.((((((.......)))))).))..)))..)))).)))))))..............((....))...)))............ ( -20.20) >DroEre_CAF1 43375 119 + 1 GAGCCGGAGAUCCUUCACUCGACCACUACACAGCUGCACUUAAUUUAGCCUUAAUUAAUUGACCUGCAGAGGAGUCGAGUAUUUCCUUCUACCCGUCCCAACCCACUCGAAAG-CUCCGC ((((.((((((.....(((((((..((...(((...((.((((((.......)))))).))..)))...))..))))))))))))).......((............))...)-)))... ( -27.20) >DroYak_CAF1 9359 119 + 1 GAGCCGGAGAUCCUUCACUCGACCACUACACAGCUGGACUUAAUUUAGCCUUAAUUAAUUGACCUGCAGUGGAGUCGGGUAUUUCCCCCUUCUUGUUCCAACUCACUCAAAAC-CUCCUC (((..(((((....))(((((((..((((.(((.(.((.((((((.......)))))))).).)))..)))).)))))))................)))..))).........-...... ( -22.60) >consensus GAGCCGGAGAUCCUUCACUCGACCACUACACAGCUGCACUUAAUUUAGCCUUAAUUAAUUGACCUGCAGUAGAGUCGAGUAUUUCCUUCUUCCCGUUCCAACCCACUCAAAAC_AUCCUC .....((((((.....(((((((..((((.(((...((.((((((.......)))))).))..)))..)))).))))))))))))).................................. (-19.76 = -20.08 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:17:01 2006