Locus 8492

Sequence ID 3L_DroMel_CAF1
Location 22,284,092 – 22,284,212
Length 120
Max. P 0.690028
window13898

overview

Window 8

Location 22,284,092 – 22,284,212
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.75
Mean single sequence MFE -21.42
Consensus MFE -16.98
Energy contribution -17.42
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.81
Structure conservation index 0.79
SVM decision value 0.33
SVM RNA-class probability 0.690028
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22284092 120 - 23771897
CAACUGACAGUGGCACAAAACCCCCAAAAAGAAACAAAUGCAGCAGUUGAAUAAAAUAAACAAACCAAAUGCGGUUAGCCGCAGUGCGUUACAAAUUAAAUUAUUGCACGAGCAAUCAGC
((((((......(((.......................)))..))))))....................(((((....)))))(((((................)))))((....))... ( -21.49)
>DroSec_CAF1 42460 120 - 1
CAACUGACAGUGGCACAAAACCCCCAAAAAGAAACAAAUGCAGCAGUUGAAUAAAAUAAAUAAACCAAAUGCGGUUAGCCGCAGUGUGUAACAAAUUAAAUUAUUGCACGAGCAAUCAGC
((((((......(((.......................)))..))))))....................(((((....)))))..((((((.((......)).))))))((....))... ( -20.90)
>DroSim_CAF1 34507 120 - 1
CAACUGACAGUGGCACAAAACCCCCAAAAAGAAACAAAUGCAGCAGUUGAAUAAAAUAAAUAAACCAAAUGCGGUUAGCCGCAGUGUGUAACAAAUUAAAUUAUUGCACGAGCAAUCAGC
((((((......(((.......................)))..))))))....................(((((....)))))..((((((.((......)).))))))((....))... ( -20.90)
>DroEre_CAF1 41036 120 - 1
CAACUGACAGUGGCACAAAACCCCCAAAAAGAAACAAAUUCAGCAGUUGAAUAAAAUAAAUAAACCAAAUGCGGUUAGCCGCAGUGUGUAACAAAUUAAAUUAUUACACGAGCAAUCAGC
...((((..(((((....((((........(((.....))).(((.(((................))).))))))).)))))..(((((((.((......)).))))))).....)))). ( -22.39)
>DroYak_CAF1 6965 119 - 1
CACCUGACAGUGACACAAAACCCCCAAAAAGAAACAAAUGCAGCAGUUGAAUGAAAUAAA-AAACAUAAUGCGGUUAGCCGCAGUGUGUAACAAAUUAAAUUAUUGCACAAGCAAUCUGC
(((......)))..............................((((..............-..(((((.(((((....))))).))))).............(((((....))))))))) ( -21.40)
>consensus
CAACUGACAGUGGCACAAAACCCCCAAAAAGAAACAAAUGCAGCAGUUGAAUAAAAUAAAUAAACCAAAUGCGGUUAGCCGCAGUGUGUAACAAAUUAAAUUAUUGCACGAGCAAUCAGC
...((((..((.(((((............................(((..............)))....(((((....))))).))))).))...........((((....)))))))). (-16.98 = -17.42 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:58 2006