Locus 8491

Sequence ID 3L_DroMel_CAF1
Location 22,283,664 – 22,283,781
Length 117
Max. P 0.961449
window13897

overview

Window 7

Location 22,283,664 – 22,283,781
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.81
Mean single sequence MFE -26.22
Consensus MFE -24.72
Energy contribution -24.96
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.53
Structure conservation index 0.94
SVM decision value 1.53
SVM RNA-class probability 0.961449
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22283664 117 - 23771897
CGGCCAGCUCACUUUCGUUUUAAAGCUGCCAGUUGAAGCCAAUAAGCCAAAGUAACUGGGUAAACACAUGUACCAGCA---GCAGCACCCAAAUGGCCAACAAUUUUUAAACAAGAUAGA
.(((((((........))......(((((((((((..((......)).....))))))((((........)))).)))---))..........)))))...................... ( -26.40)
>DroSec_CAF1 42023 120 - 1
CGGCCAGCUCACUUUCGUUUUAAAGCUGCCAGUUAAAGCCAAUAAGCCAAAGUAACUGGGUAAACACAUGUACCAGCAGCAGCAGCACCCAAAUGGCCAACAAUUUUUAAACAAGAUAGA
.(((((((((((....))......(((((((((((..((......)).....))))))((((........)))).))))).).))).......)))))...................... ( -26.71)
>DroSim_CAF1 34068 120 - 1
CGGCCAGCUCACUUUCGUUUUAAAGCUGCCAGUUGAAGCCAAUAAGCCAAAGUAACUGGGUAAACACAUGUACCAGCAGCAGCAGCACCCAAAUGGCCAACAAUUUUUAAACAAGAUAGA
.(((((((((((....))......(((((((((((..((......)).....))))))((((........)))).))))).).))).......)))))...................... ( -26.41)
>DroEre_CAF1 40634 117 - 1
CGGCCAGCUCACUUUCGUUUUAAAGCUGCCAGUUGAAGCCAAUAAGCCAAAGUAACUGGGUAAACACAUGUACCAGCA---GCAGCACCCAAAUGGCCAACAAUUUUUAAACAAGAUAGA
.(((((((........))......(((((((((((..((......)).....))))))((((........)))).)))---))..........)))))...................... ( -26.40)
>DroYak_CAF1 6666 117 - 1
CGGCCAGAUCACUUUCGUUUUAAAGCUGCAAGUUGAAGCCAAUAAGCCAAAGUAACAGGGUAAACACAUGUACCAGCA---GCAGCAUCCAAAUGGCCAACAAUUUUUAAACAAGAUAGA
.(((((((......))........(((((..((((..((......)).....))))..((((........)))).)))---))..........)))))...................... ( -25.20)
>consensus
CGGCCAGCUCACUUUCGUUUUAAAGCUGCCAGUUGAAGCCAAUAAGCCAAAGUAACUGGGUAAACACAUGUACCAGCA___GCAGCACCCAAAUGGCCAACAAUUUUUAAACAAGAUAGA
.(((((....((....))......(((((((((((..((......)).....))))))((((........)))).......))))).......)))))...................... (-24.72 = -24.96 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:57 2006