Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,283,504 – 22,283,624 |
Length | 120 |
Max. P | 0.740870 |
Location | 22,283,504 – 22,283,624 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.98 |
Mean single sequence MFE | -37.65 |
Consensus MFE | -24.58 |
Energy contribution | -26.95 |
Covariance contribution | 2.37 |
Combinations/Pair | 1.03 |
Mean z-score | -1.92 |
Structure conservation index | 0.65 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740870 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22283504 120 + 23771897 CAGCCACCAGCACGUGUACCAAGCUUGUUGGCUCUGCUGCUCCUGCUGCCUCUGCUGCUGCCUUUAUUGAAACUAUUUUCACAGAGUUUAAGCGGGUGCGACUGCGGGUGUAUGUGGCGU ..(((((..((((.((((...((((....))))....(((.((((((..((((((....))......(((((....))))).))))....)))))).)))..)))).))))..))))).. ( -40.50) >DroSec_CAF1 41888 95 + 1 CAGCCACCAGCACGUGUACCAAGCUUGUUGGCUCUG------------------CUGCUGCCUUUAUAGAAACUAUUUUCACAGAGUUUAAGCUG-------UGCGGGUGUAUGUGGCGU ..(((((..((((.(((((..((((((..(((((((------------------(....)).......((((....))))..)))))))))))))-------)))).))))..))))).. ( -34.30) >DroSim_CAF1 33915 113 + 1 CAGCCACCAGCACGUGUAGCAAGCUUGUUGGCUCUGCUGCUCCUGCUGCCUCUGCUGCUGCCUUUAUUGAAACUAUUUUCACAGAGUUUAAGCUG-------UGCGGGUGUAUGUGGCGU ..((((((((((.(.((((((((((....)))).)))))).).)))))..(((((.(((..((((..(((((....))))).))))....)))..-------.))))).....))))).. ( -41.10) >DroEre_CAF1 40486 108 + 1 CAGGCACCAGCACGUGUACCAAGCUUGUUUG-----CUGGCUCUGCUGCUUCUGCUGCUGUCUUUAUUGAAACUAUUUUCACAGAGUUUAAGCUG-------UGCGGGUGUAUGUGGUGU ...((((((((((.(((((..((((((...(-----(((((...((.((....)).)).))).....(((((....)))))...))).)))))))-------)))).))))...)))))) ( -34.70) >consensus CAGCCACCAGCACGUGUACCAAGCUUGUUGGCUCUGCUGCUCCUGCUGCCUCUGCUGCUGCCUUUAUUGAAACUAUUUUCACAGAGUUUAAGCUG_______UGCGGGUGUAUGUGGCGU ..(((((..((((.((((...((((((...((((((........((.((....)).))..........((((....)))).)))))).))))))........)))).))))..))))).. (-24.58 = -26.95 + 2.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:56 2006