| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,571,036 – 2,571,131 |
| Length | 95 |
| Max. P | 0.538935 |
| Location | 2,571,036 – 2,571,131 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 94.39 |
| Mean single sequence MFE | -22.43 |
| Consensus MFE | -21.56 |
| Energy contribution | -21.23 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.538935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2571036 95 + 23771897 AAUUUUACGGUAAGCCACGUGCUAAAUUUUGUAAAUUUGGUGGUGUUUUCAAUUGCGGAAAUUGUUUACAGUGCGCAAUUUAACAUUAUAACCGU ......(((((..((((..(((........)))....))))((((((...(((((((...((((....)))).))))))).))))))...))))) ( -23.70) >DroSec_CAF1 32662 95 + 1 AAUUUUACGGUAAGCCACGUGCUAAAUUUUGUCAAUUUGGUGGUGUUUUCAAUUGCGAAAGUUGUUUACAGUGCGCAAUUUAACAUUGUAACCGU ......(((((.........((((((((.....))))))))((((((...(((((((...((((....)))).))))))).))))))...))))) ( -21.40) >DroEre_CAF1 47043 95 + 1 AAUUUUACGGUAAGCCACGUGCUAAAUUUUGUCUAUUUGGUGGUGUUUUCAGUUGCGGAAGUUGUUUACAGUGCGCAAUUUAACACUAUAACCGC .......((((.(((.....)))................((((((((...(((((((.(...((....)).).))))))).)))))))).)))). ( -22.20) >consensus AAUUUUACGGUAAGCCACGUGCUAAAUUUUGUCAAUUUGGUGGUGUUUUCAAUUGCGGAAGUUGUUUACAGUGCGCAAUUUAACAUUAUAACCGU .......((((.........((((((((.....))))))))((((((...(((((((...((((....)))).))))))).))))))...)))). (-21.56 = -21.23 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:42 2006