| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,282,580 – 22,282,693 |
| Length | 113 |
| Max. P | 0.567710 |
| Location | 22,282,580 – 22,282,693 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.52 |
| Mean single sequence MFE | -32.02 |
| Consensus MFE | -20.59 |
| Energy contribution | -20.95 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.567710 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22282580 113 - 23771897 AAACUUUUCGC---AUGCAGUGGCUCCUGUU----UUCCCCCUGGCCACCCCACAAACAGGAUCAGCGGAAACAACAGCGGCAGGCUGAAAUAAACUUGAAAAAUUCUGCGCAGGAGCAA ........(((---.....)))((((((((.----.....((((.............))))....((((((....((((.....))))........((....)))))))))))))))).. ( -32.32) >DroSec_CAF1 40957 106 - 1 AAACUUUUUGC---AUGCAGUGGCUCCUGCUCCCUUUCC-----------CCACAAACAGGAUCAGCGGGAACAACACCGGCAGGCUGAAGUAAACUUGAAAAAUUCUGCGCAGGAGCAA ...........---........((((((((((((..(((-----------.........))).....)))).........(((((.(.(((....))).).....))))))))))))).. ( -28.50) >DroSim_CAF1 32972 117 - 1 AAACUUUUCGC---AUGCAGUGGCUCCUGCUCCCUUUCCCCCUGUUUGCCCCACAAACAGGAUCAGCGGGAACAACACCGGCAGGCUGAAGUAAACUUGAAAAAUUCUGCGCAGGAGCAA ........(((---.....)))((((((((((((......((((((((.....))))))))......)))).........(((((.(.(((....))).).....))))))))))))).. ( -39.50) >DroEre_CAF1 39602 100 - 1 AAACUUUGCGCUUUCUGCAAUGGCUUCUGCU-----UCCCCCUGGCCGCCCCACAAACAGGAUCAGCGG---------------GCUGAAGUAAACUUGAAAAACUCUGCGCAGGAGCCA .....(((((.....)))))(((((((((((-----(((((((((((............)).)))).))---------------)..)))(((.(.((....)).).))))))))))))) ( -31.10) >DroYak_CAF1 5613 110 - 1 AAACAUUUUGC---CUGCAGUGGCUUCUGUU----UUCCCCCUGGCCGCACAACAAACAGGAUCGGCGGGAACAACAC---CAGGCUGAAGUAAACUUGAAAAAUUUUGGGCAGGAGAAA .....((((.(---((((...(((((.((((----(((((.((((((............)).)))).))))).)))).---.))))).(((....)))............))))))))). ( -28.70) >consensus AAACUUUUCGC___AUGCAGUGGCUCCUGCU____UUCCCCCUGGCCGCCCCACAAACAGGAUCAGCGGGAACAACACCGGCAGGCUGAAGUAAACUUGAAAAAUUCUGCGCAGGAGCAA .........((.....))....((((((((..........((((.............)))).(((((.................))))).....................)))))))).. (-20.59 = -20.95 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:49 2006