Locus 8485

Sequence ID 3L_DroMel_CAF1
Location 22,282,073 – 22,282,193
Length 120
Max. P 0.641157
window13886

overview

Window 6

Location 22,282,073 – 22,282,193
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.75
Mean single sequence MFE -30.50
Consensus MFE -23.49
Energy contribution -24.26
Covariance contribution 0.77
Combinations/Pair 1.06
Mean z-score -1.64
Structure conservation index 0.77
SVM decision value 0.22
SVM RNA-class probability 0.641157
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22282073 120 - 23771897
CCACUUGACCAGGGCAGAAGCAAUUGAGAGUAGAAAGGCGACAUGGAAAUAGAAUGAAAACUUUGCUUUCAAGUCACUCCAAUUAAAGUUGCUCAGAUGGAGACCGAGAUGGAGAUAAGG
(((((((....((((((....(((((.((((.(.....)(((.(((((.((((.(....).)))).))))).))))))))))))....))))))....(....))))).)))........ ( -28.90)
>DroSec_CAF1 40445 120 - 1
CCACUUGACCAGGGCAGAAGCAAUUGAGAGAAGAAAGACGACAUGGAAAUAGAAUGAAAACUUUGCUUUCAAGUCGCUCCAAUUAAAGUUGCCCAGAUGGAGACCGAGAUGGUGAUGAGG
(((((((....((((((....(((((.(((........((((.(((((.((((.(....).)))).))))).))))))))))))....))))))....(....))))).)))........ ( -31.40)
>DroSim_CAF1 32454 120 - 1
CCACUUGACCAGGGCAGAAGCAAUUGAGAGUAGAAAGGCGACAUGGAAAUAGAAUGAAAACUUUGCUUUCAAGUCGCUCCAAUUAAAGUUGCCCAGAUGGAGACCGAGAUGGUGAUGAGG
(((((((....((((((....(((((.((........(((((.(((((.((((.(....).)))).))))).))))))))))))....))))))....(....))))).)))........ ( -32.20)
>DroEre_CAF1 39107 120 - 1
CCACUUGACCAGGGCAGAAGCAAUUCAGAGUAGAAAGGCGACAUGGAAAUAGAAUGAAAACUUUGCUUUCAAGUCGCUCCAAUUAAAGUUGCCCAGAUGGAAACCGAGAUGGAGAUGAGG
(((((((....((((((((....)))..........((((((.(((((.((((.(....).)))).))))).))))))...........)))))....(....))))).)))........ ( -33.10)
>DroYak_CAF1 5154 108 - 1
CCACUUGGCCAGGGCAGAAGCAAUUCAGAGUAGAAAGGCGACAUGGAAAUAGAA-AAAAACUUUGCUUUCAAGUCGCUCCAAUUAAAGUUGCC-----------CGAGAUGAAGAUGAAG
.(((((.((..((((((((....)))..........((((((.(((((.((((.-......)))).))))).))))))...........))))-----------)..).).))).))... ( -26.90)
>consensus
CCACUUGACCAGGGCAGAAGCAAUUGAGAGUAGAAAGGCGACAUGGAAAUAGAAUGAAAACUUUGCUUUCAAGUCGCUCCAAUUAAAGUUGCCCAGAUGGAGACCGAGAUGGAGAUGAGG
(((((((....((((((....(((((.((((.(.....)(((.(((((.((((........)))).))))).))))))))))))....))))))....(....))))).)))........ (-23.49 = -24.26 +   0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:46 2006