| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,281,843 – 22,281,961 |
| Length | 118 |
| Max. P | 0.500000 |
| Location | 22,281,843 – 22,281,961 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 79.24 |
| Mean single sequence MFE | -17.15 |
| Consensus MFE | -14.27 |
| Energy contribution | -13.83 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.83 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22281843 118 - 23771897 AAUAAAUAAAGUACACCUACCACGCCCACUUUUCACCGCCUCACCCGAAAACUUUUCUAUAC-ACUCGCAUUAUUUUCUGGCUCGCCCCACGUGACGAGAAGUUUUCCACUCUCUGAUG ..............................................(((((((((((.....-....((...........))((((.....)))).)))))))))))............ ( -14.00) >DroEre_CAF1 38907 104 - 1 --------AAGUACCCC------UGCUACUUUUCAUUGCCUCCUCGGAAAACUUUUCUAUAC-ACUCGCAUUAUUUUCGGGCUCACCCCACGUGACGGGAAGUUUUCCACUCUCUGGUG --------...((((..------.((...........))......(((((((((..(.....-.((((.(.....).)))).((((.....)))).)..))))))))).......)))) ( -21.40) >DroYak_CAF1 4953 104 - 1 --------A-AUACCCC------UGCUUCUUUUCAUCGCCUUCCCCGAAAACUUUUCUAUACCACUCGCUUUUAUUUCUGGCUCGCCCCACGUGACGAGAAGUUUUCCACUCUCUGCUG --------.-.......------..............((.......(((((((((((..........(((.........)))((((.....)))).)))))))))))........)).. ( -16.06) >consensus ________AAGUACCCC______UGCUACUUUUCAUCGCCUCCCCCGAAAACUUUUCUAUAC_ACUCGCAUUAUUUUCUGGCUCGCCCCACGUGACGAGAAGUUUUCCACUCUCUGAUG ..............................................(((((((((((..........((...........))((((.....)))).)))))))))))............ (-14.27 = -13.83 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:45 2006