Locus 8483

Sequence ID 3L_DroMel_CAF1
Location 22,280,810 – 22,280,924
Length 114
Max. P 0.949341
window13884

overview

Window 4

Location 22,280,810 – 22,280,924
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.67
Mean single sequence MFE -28.65
Consensus MFE -22.45
Energy contribution -22.53
Covariance contribution 0.08
Combinations/Pair 1.08
Mean z-score -2.24
Structure conservation index 0.78
SVM decision value 1.39
SVM RNA-class probability 0.949341
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22280810 114 + 23771897
CUCUCGCAACCCCUCAACACAA----AGGCCUACAAACAAAUUAAGCAGAAAAUAAAAGCUUUAUCUGCACGCCAGU--GUAUGUGUAUUUGUGGGUGGGAAAACUUAAAAACAAGGGUA
..........((((.......(----((.(((((..((((((...(((((.((........)).)))))((((....--....))))))))))..)))))....))).......)))).. ( -26.64)
>DroSec_CAF1 39202 113 + 1
-UUUCGCAUCCC--CAGCACGA----AAGCCUACAAACAAAUUAAGCAGAAAAUAAAAGCUUUAUCUGCACGCCAGUGUGUAUGUGUGUUUGUGGGUGGGAAAACUUAAAAACAAGGGUA
-.........((--((...(..----..)((((((((((......(((((.((........)).)))))((((....)))).....))))))))))))))...((((........)))). ( -28.60)
>DroSim_CAF1 30795 113 + 1
-UUUCGCAUCCC--CAACACGA----AAGCCUACAAACAAAUUAAGCAGAAAAUAAAAGCUUUAUCUGCACGCCAGUGUGUAUGUGUGUUUGUGGGUGGGAAAACUUAAAAACAAGGGUA
-.........((--((...(..----..)((((((((((......(((((.((........)).)))))((((....)))).....))))))))))))))...((((........)))). ( -28.60)
>DroEre_CAF1 37857 115 + 1
-CUUCGCAUCCC--CAACACGAAAGAAAGCCUACAAACAAAUUAAGCAGAAAAUAAAAGCUUUAUCUGCACGCCAGU--GCAUGGGUGUUUGUGGGUGGGAAAACUUAAAAACAAGGCUG
-....((.((((--.....(....)...(((((((((((......(((((.((........)).)))))...(((..--...))).)))))))))))))))...(((......))))).. ( -33.40)
>DroYak_CAF1 3910 110 + 1
-UUUCGCAUCCU--CAAUACGA-----AGCCUACAAACAAAUUAAGCAGAAAAUAAAAGCUUUAUCUGCACGCCAGU--GUAUGUGUGUUUGUGGGUGGGAAAACUUAAAAACAAGGGUA
-......(((((--........-----.((((((((((.......(((((.((........)).)))))((((....--....))))))))))))))((.....))........))))). ( -26.00)
>consensus
_UUUCGCAUCCC__CAACACGA____AAGCCUACAAACAAAUUAAGCAGAAAAUAAAAGCUUUAUCUGCACGCCAGU__GUAUGUGUGUUUGUGGGUGGGAAAACUUAAAAACAAGGGUA
........((((................(((((((((((......(((((.((........)).)))))..((......)).....)))))))))))))))................... (-22.45 = -22.53 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:44 2006