Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,280,062 – 22,280,175 |
Length | 113 |
Max. P | 0.854319 |
Location | 22,280,062 – 22,280,175 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.01 |
Mean single sequence MFE | -31.68 |
Consensus MFE | -28.42 |
Energy contribution | -28.74 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.03 |
Mean z-score | -1.37 |
Structure conservation index | 0.90 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.854319 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22280062 113 + 23771897 CCCCUUUCUGCCACCAAAAA-UUUGGAGAAGAAGUAAUAGUCUUUAAGC------CUUAAAGCGCCAACCCGAUUGCGGGCCUGGCAUAACUUCUGGUUCUUUGUCAAGCGGGAAAGUAA ....(((((((..((((...-.)))).((((((.((..(((......((------......))((((.((((....))))..))))...)))..)).)))))).....)))))))..... ( -31.20) >DroSec_CAF1 38447 113 + 1 CCCCUUUCUGCCACCAAAAA-UGUGGAGAAAAAGUAAUGGUCUUUAAGC------CUUAAAGCGCCAACCCGAUUGCGGGCCUGGCAUAACUUCUGGUUCUUUGUCAAGCGGGAAAGUAA .((((((((.((((......-.)))))))))......(((((((((...------..))))).))))..(((....)))((.(((((.(((.....)))...))))).)))))....... ( -29.10) >DroSim_CAF1 30038 113 + 1 CCCCUUUCUGCCACCAAAAA-UGAGGAGAAAAAGUAAUGGUCUUUAAGC------CUUAAAGCGCCAACCCGAUUGCGGGCCUGGCAUAACUUCUGGUUCUUUGUCAAGCGGGAAAGUAA ....(((((((...((((((-(.(((((..........(((......))------).......((((.((((....))))..))))....))))).))).))))....)))))))..... ( -30.80) >DroEre_CAF1 37106 116 + 1 ---CUUUCUGCCACCAAAAA-UAGGGAGAACAAGUAAUAGUCUUUAAGCGGCAGUCUUAAAGCGCCAGCCCGAUUGCGGGCCUGGCAUAACUUCUGGCUCUUUGUCAAGCGGGAAAGUAA ---.(((((((........(-(((((((...((((....(.((((((((....).))))))))(((((((((....)))).)))))...))))....))))))))...)))))))..... ( -37.20) >DroYak_CAF1 3171 114 + 1 CCCCUUUCUGCCACCAAAAACUAAGGAGAAAAAGUAAUAGUCUUUAAGC------CUUAAAGCGCCAACCCGAUUGCGGGCCUGGCAUAACUUCUGGUUCUUUGUCAAGCGGGAAAAUAA ....(((((((...(((((((((.((((...........(.(((((...------..))))))((((.((((....))))..))))....))))))))).))))....)))))))..... ( -30.10) >consensus CCCCUUUCUGCCACCAAAAA_UAAGGAGAAAAAGUAAUAGUCUUUAAGC______CUUAAAGCGCCAACCCGAUUGCGGGCCUGGCAUAACUUCUGGUUCUUUGUCAAGCGGGAAAGUAA ....(((((((...((((.....(((((...........(.(((((((.......))))))))((((.((((....))))..))))....))))).....))))....)))))))..... (-28.42 = -28.74 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:16:43 2006