| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,570,926 – 2,571,018 |
| Length | 92 |
| Max. P | 0.688567 |
| Location | 2,570,926 – 2,571,018 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 93.48 |
| Mean single sequence MFE | -26.00 |
| Consensus MFE | -24.46 |
| Energy contribution | -24.47 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.688567 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2570926 92 - 23771897 CACUCCGGAAACGGGGCGAAAAGAAAAGAAAAGAGGAAGACAUCCUAGAGGUGGGCAGGGAAUAGUGUGGCUGUGUUUGGCGUCUGGCGUCG (.(((((....))))).)..............((.(.((((...(((((.(..(.((.(......).)).)..).))))).))))..).)). ( -26.70) >DroSec_CAF1 32551 92 - 1 CACUCCGGAAACGGGGCGAAAAGAAAAGAAAAGAGGAAGACAUCCUAAAGGUGGGCAGGGAAUAGUGUGGCUGUGUUUGGCGUCUGGCGUCG (.(((((....))))).)..............((.(.((((...(((((.(..(.((.(......).)).)..).))))).))))..).)). ( -26.60) >DroEre_CAF1 46932 92 - 1 CUCUCCGGAAACGGGGCGAAAAGAAAAGAAAAGAAGAAGAGGUCCUAGAGGUGGGCAGAGAAUAGUGUGGCUGCGUUCGGCGUCUAGCGUCG (.(((((....))))).)......................((..(((((.((.(((((..(......)..))))...).)).)))))..)). ( -24.70) >consensus CACUCCGGAAACGGGGCGAAAAGAAAAGAAAAGAGGAAGACAUCCUAGAGGUGGGCAGGGAAUAGUGUGGCUGUGUUUGGCGUCUGGCGUCG (.(((((....))))).)..............((.(.((((...(((((.(..(.((.(......).)).)..).))))).))))..).)). (-24.46 = -24.47 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:41 2006